Glyma17g02470 - SoyBase

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Report for Sequence Feature Glyma17g02470

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1590238
stop:	1595863
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18810	AT	Annotation by Michelle Graham. TAIR10: SC35-like splicing factor 28 \| chr5:6268925-6271158 REVERSE LENGTH=236	SoyBase	E_val: 3.00E-52	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0007059	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome segregation	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016607	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0130	KOG	RNA-binding protein RBM8/Tsunagi (RRM superfamily)	JGI		ISS
KOG4207	KOG	Predicted splicing factor, SR protein superfamily	JGI		ISS
PTHR23147	Panther	SERINE/ARGININE RICH SPLICING FACTOR	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9RSX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/arginine rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9RSX1_RICCO	SoyBase	E_val: 5.00E-76	ISS
UniRef100_I1MRC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRC7_SOYBN	SoyBase	E_val: 6.00E-164	ISS

Expression Patterns of Glyma17g02470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g02470 not represented in the dataset	Glyma17g02470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g02470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g021700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g02470

Limit To All Plant Sequences

>Glyma17g02470.2   sequence type=transcript   gene model=Glyma17g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTCCATTTCTTCCTTCTTGTGCTCTGGAGGTTCCTAGGCTTTTCTCTCCCCTCTTCTGTTTAGGTTCCTAACATGTATCTTGATTGTTTTGAAACATCTATCCTGTAATTAATTTTTATTATAAGGTTGGTAAGCGGTGCGGGGAGTGTCGTGGAATGGGCCTAAGGCTAAGATTACCCGGATTTAATTAGACCCGCAAGAGGTCAGTCAACTAAACCGGAGCGGGTCGAATACACTTATTTAGTTATTTTAATCCAAACGCTAGTGGTTTCCTTTTGTCGCATCGCTTCGCTCCCTACCCTTGGGCTAGGGTTTTACTTGTGCGTCTTCTCCGAAAGCAAGCTAGGGTTTGTCCGTGTGGCAGAATGGGAAGGTATCGAAGCCGGAGCAGGAGCTATAGCCCCCGGCGGCGAAGCAGGAGCCCACCGGCACCGCGCGGACGGAACCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCTTACAGAGACCGCCGCTCACCTCTTCCTTCCGGCTTGCTTGTTCGCAATCTTCCCCTTGATGCCAGGCCTGAGGATCTTAGGATCCCATTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCTAAAAATTACTACACTGGTGAGCCTCGCGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAGCAACATCTTAATCATACTATCATTGGTGGACGTGAAATAAGGATTGTTTTCGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTGTTAACACTCGAGGAAGTGGTCGATATGGAGGTGGTAGAAGGAGGAATCATACTAGATCCCCACGACGCCGATATCGTTCATATTCTCGGTCTCCATCACCAGCTAGGGATGATTCAAGATAATAAAGTGAAATTGGAAGACTTTAAAGATGGATTAATAAAGATTAACGAGTAAAGAGGCTTAAAGTGATGCGCTACTTGCTTATGTAGCTATCAAAGACTCCATAAGAAATATCCATATCAAATTTGCCTTTTTGTGCCAGTGGCATGGGCTTTCCCTACTTTGTGGTATTTGGTTTGTGGCTGAAGAAATGGTTCAAATGAGTACTCTTTTCCGATTCCCTTTATAAAATTTCTGTGAGGAAGATTTTATTTAGTTTAATATCTTGTTTTGCGTATACTATCCAGTTAAGAAAGAATATAAAGCTTATAGTTGGCCAAAGAAAATCACATCTTCAAAGAATGGAAGCCAAAGTTTATACGGGTAGAGATATGATGACATTGTGCAAGAAAGATAGTTGTGATTTTAGAAAGTTGGACAAAGAGAGCTATGAAGTTACCAGATGCTGATCTTGCAGTACATCATTCATAACTCTCAGTGTTTGGATCCAAGTGTCATATATTTGTCCAGAAACTATGGAAAGAAAGGGACGGCAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCTCTCTCCCAGTGGTGGGAAGGACTACAGGAAGTCCCCTCGTCTTAGGGAGAATGGTCGGAGTCCTAATGACAAGAAGGATCAGACACCCAGCAGATCCGAGAGTCCTAGGGGCAATGATCGTAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGATTTGTGAGCAGGCAGAGATTGGAATGTGGAATGTGGAATGTGGTTAATTCGGTCTTTCCTGTGACCACATACTGTAGCTAAAACTCAGACATTTTGAAAGATACAAAAATTGTAGCTAAGCAAAGTCTGTGATGTTAATATTAGTATTCCGTAGGTGACAGACACCCCCATCAGAAGGTAGTTTGACTTGGTGTGTCATTTTGGATGACTCAGATTAGACTTTTTCATCAGTTTACAAATTTTCGGATACTTGTTCATGGATTATTTCTATATTTATTTATATGGTTGGTTCATCGTTATAAGCTTAAATGTTTCTACTTCAAAGTTAACGTTTAAAGGAAGA

>Glyma17g02470.3   sequence type=transcript   gene model=Glyma17g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTCCATTTCTTCCTTCTTGTGCTCTGGAGGTTCCTAGGCTTTTCTCTCCCCTCTTCTGTTTAGGTTCCTAACATGTATCTTGATTGTTTTGAAACATCTATCCTGTAATTAATTTTTATTATAAGGTTGGTAAGCGGTGCGGGGAGTGTCGTGGAATGGGCCTAAGGCTAAGATTACCCGGATTTAATTAGACCCGCAAGAGGTCAGTCAACTAAACCGGAGCGGGTCGAATACACTTATTTAGTTATTTTAATCCAAACGCTAGTGGTTTCCTTTTGTCGCATCGCTTCGCTCCCTACCCTTGGGCTAGGGTTTTACTTGTGCGTCTTCTCCGAAAGCAAGCTAGGGTTTGTCCGTGTGGCAGAATGGGAAGGTATCGAAGCCGGAGCAGGAGCTATAGCCCCCGGCGGCGAAGCAGGAGCCCACCGGCACCGCGCGGACGGAACCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCTTACAGAGACCGCCGCTCACCTCTTCCTTCCGGCTTGCTTGTTCGCAATCTTCCCCTTGATGCCAGGCCTGAGGATCTTAGGATCCCATTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCTAAAAATTACTACACTGGTGAGCCTCGCGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAGCAACATCTTAATCATACTATCATTGGTGGACGTGAAATAAGGATTGTTTTCGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTGTTAACACTCGAGGAAGTGGTCGATATGGAGGTGGTAGAAGGAGGAATCATACTAGATCCCCACGACGCCGATATCGTTCATATTCTCGGTCTCCATCACCAGCTAGGGATGATTCAAGATAATAAAGTGAAATTGGAAGACTTTAAAGATGGATTAATAAAGATTAACGAGTAAAGAGGCTTAAAGTGATGCGCTACTTGCTTATGTAGCTATCAAAGACTCCATAAGAAATATCCATATCAAATTTGCCTTTTTGTGCCAGTGGCATGGGCTTTCCCTACTTTGTGGTATTTGGTTTGTGGCTGAAGAAATGGTTCAAATGAGTACTCTTTTCCGATTCCCTTTATAAAATTTCTGTGAGGAAGATTTTATTTAGTTTAATATCTTGTTTTGCGTATACTATCCAGTTAAGAAAGAATATAAAGCTTATAGTTGGCCAAAGAAAATCACATCTTCAAAGAATGGAAGCCAAAGTTTATACGGGTAGAGATATGATGACATTGTGCAAGAAAGATAGTTGTGATTTTAGAAAGTTGGACAAAGAGAGCTATGAAGTTACCAGATGCTGATCTTGCAGTACATCATTCATAACTCTCAGTGTTTGGATCCAAGTGTCATATATTTGTCCAGAAACTATGGAAAGAAAGGTACAGGTACAGGTCATATTTTGGCTAATTAGATTTTGAAGAGGAAGTAAGTATTAGTTATCACTTATGAAACAAATTAAAATTTTGGTTTGAGTGATTGTGTGCTTAATTATGTGTATTCTGTTGAAAACTTGTAGTTGCACATATTCAGATCTCTATTGATTTATAAGATGCTTATGGTTGGTATTCTCTCCCTTTTTAATGTGTGGTATATGTAATTGTGTTGTTTTAGCTATTTTTATTAACTTTGGTTTGGATAATGATGAATCCTCACTGACGTGATGACATATAGGGACGGCAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCTCTCTCCCAGTGGTGGGAAGGACTACAGGAAGTCCCCTCGTCTTAGGGAGAATGGTCGGAGTCCTAATGACAAGAAGGATCAGACACCCAGCAGATCCGAGAGTCCTAGGGGCAATGATCGTAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGATTTGTGAGCAGGCAGAGATTGGAATGTGGAATGTGGAATGTGGTTAATTCGGTCTTTCCTGTGACCACATACTGTAGCTAAAACTCAGACATTTTGAAAGATACAAAAATTGTAGCTAAGCAAAGTCTGTGATGTTAATATTAGTATTCCGTAGGTGACAGACACCCCCATCAGAAGGTAGTTTGACTTGGTGTGTCATTTTGGATGACTCAGATTAGACTTTTTCATCAGTTTACAAATTTTCGGATACTTGTTCATGGATTATTTCTATATTTATTTATATGGTTGGTTCATCGTTATAAGCTTAAATGTTTCTACTTCAAAGTTAACGTTTAAAGGAAGA

Coding sequences of Glyma17g02470

Limit To All Plant Sequences

>Glyma17g02470.1   sequence type=CDS   gene model=Glyma17g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGTATCGAAGCCGGAGCAGGAGCTATAGCCCCCGGCGGCGAAGCAGGAGCCCACCGGCACCGCGCGGACGGAACCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCTTACAGAGACCGCCGCTCACCTCTTCCTTCCGGCTTGCTTGTTCGCAATCTTCCCCTTGATGCCAGGCCTGAGGATCTTAGGATCCCATTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCTAAAAATTACTACACTGGTGAGCCTCGCGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAGCAACATCTTAATCATACTATCATTGGTGGACGTGAAATAAGGATTGTTTTCGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTGTTAACACTCGAGGAAGTGGTCGATATGGAGGTGGTAGAAGGAGGAATCATACTAGATCCCCACGACGCCGATATCGTTCATATTCTCGGTCTCCATCACCAGCTAGGGATGATTCAAGGGACGGCAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCTCTCTCCCAGTGGTGGGAAGGACTACAGGAAGTCCCCTCGTCTTAGGGAGAATGGTCGGAGTCCTAATGACAAGAAGGATCAGACACCCAGCAGATCCGAGAGTCCTAGGGGCAATGATCGTAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGA

>Glyma17g02470.2   sequence type=CDS   gene model=Glyma17g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGTATCGAAGCCGGAGCAGGAGCTATAGCCCCCGGCGGCGAAGCAGGAGCCCACCGGCACCGCGCGGACGGAACCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCTTACAGAGACCGCCGCTCACCTCTTCCTTCCGGCTTGCTTGTTCGCAATCTTCCCCTTGATGCCAGGCCTGAGGATCTTAGGATCCCATTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCTAAAAATTACTACACTGGTGAGCCTCGCGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAGCAACATCTTAATCATACTATCATTGGTGGACGTGAAATAAGGATTGTTTTCGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTGTTAACACTCGAGGAAGTGGTCGATATGGAGGTGGTAGAAGGAGGAATCATACTAGATCCCCACGACGCCGATATCGTTCATATTCTCGGTCTCCATCACCAGCTAGGGATGATTCAAGATAA

>Glyma17g02470.3   sequence type=CDS   gene model=Glyma17g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGTATCGAAGCCGGAGCAGGAGCTATAGCCCCCGGCGGCGAAGCAGGAGCCCACCGGCACCGCGCGGACGGAACCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCTTACAGAGACCGCCGCTCACCTCTTCCTTCCGGCTTGCTTGTTCGCAATCTTCCCCTTGATGCCAGGCCTGAGGATCTTAGGATCCCATTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCTAAAAATTACTACACTGGTGAGCCTCGCGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAGCAACATCTTAATCATACTATCATTGGTGGACGTGAAATAAGGATTGTTTTCGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTGTTAACACTCGAGGAAGTGGTCGATATGGAGGTGGTAGAAGGAGGAATCATACTAGATCCCCACGACGCCGATATCGTTCATATTCTCGGTCTCCATCACCAGCTAGGGATGATTCAAGATAA

Predicted protein sequences of Glyma17g02470

Limit To All Plant Sequences

>Glyma17g02470.1   sequence type=predicted peptide   gene model=Glyma17g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRYRSRSRSYSPRRRSRSPPAPRGRNRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRVNTRGSGRYGGGRRRNHTRSPRRRYRSYSRSPSPARDDSRDGRGRDDYYSPERSRSYSRSLSPSGGKDYRKSPRLRENGRSPNDKKDQTPSRSESPRGNDRSPSRSRSRSYSPR*

>Glyma17g02470.2   sequence type=predicted peptide   gene model=Glyma17g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRYRSRSRSYSPRRRSRSPPAPRGRNRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRVNTRGSGRYGGGRRRNHTRSPRRRYRSYSRSPSPARDDSR*

>Glyma17g02470.3   sequence type=predicted peptide   gene model=Glyma17g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRYRSRSRSYSPRRRSRSPPAPRGRNRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRVNTRGSGRYGGGRRRNHTRSPRRRYRSYSRSPSPARDDSR*

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