Glyma17g02440 - SoyBase

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Report for Sequence Feature Glyma17g02440

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1572838
stop:	1581595
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18860	AT	Annotation by Michelle Graham. TAIR10: inosine-uridine preferring nucleoside hydrolase family protein \| chr5:6291023-6295581 FORWARD LENGTH=890	SoyBase	E_val: 0	ISS
GO:0006148	GO-bp	Annotation by Michelle Graham. GO Biological Process: inosine catabolic process	SoyBase	N/A	ISS
GO:0006154	GO-bp	Annotation by Michelle Graham. GO Biological Process: adenosine catabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0047622	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenosine nucleosidase activity	SoyBase	N/A	ISS
GO:0047724	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inosine nucleosidase activity	SoyBase	N/A	ISS
KOG2938	KOG	Predicted inosine-uridine preferring nucleoside hydrolase	JGI		ISS
PTHR12304	Panther	INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE	JGI		ISS
PF01156	PFAM	Inosine-uridine preferring nucleoside hydrolase	JGI		ISS
UniRef100_G7JJ08	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyrimidine-specific ribonucleoside hydrolase rihB n=1 Tax=Medicago truncatula RepID=G7JJ08_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MRC4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MRC4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02440

Paralog	Evidence	Comments
Glyma07g38300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g021400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02440

Limit To All Plant Sequences

>Glyma17g02440.1   sequence type=CDS   gene model=Glyma17g02440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTGTTGGGTAGCAGTAGCAGTTGCAGTAACAGCGTTGATTATTACAGGAGGAGGTAGAGGTTGTGCGCCTCATCGGATTCTTGTGGATACAGATGTTGACACTGACGATTTCTTTGCTCTTCTCTACCTCTTGAAGCTCAACACTTCACAATTTCAATTGGAGGGCATCAGCATCAGTGCAAATGCTTGGACGAGTGCTGGTCATGCTGTTAATCAAATATATGATCTACTTTACATGATGGGTCGAGATGACGTTGCCGTTGGAGTTGGAGGCGAGGGTGGAATACTACAAAATGGTACTATACTCCCTAACGTCGGTGGATATCTTCCAATAATAGAACAGGGAATGACAACAGTAGGTGGTTGCAGATACAGGCGGGCCATTCCTGTTGGTCTTGGAGGGCGCTTAGACATCGATGCCAATTATGGCATCAGGAAAGCTTTCCTACCACAGGGAACTAGGAAATACACTCCACTACAGCAGCCAACTGCACAGGAAGTGTTGATTGAAAAAATATCTGCAGGTCCAATAACTCTGCTTGTGATTGGAGCGCATACAAACATTGCAATTTTCCTAATGAATAATCCACACCTAAAGAAAAATGTGGAACATATTTATATAATGGGCGGCGGTGTAAGATCAAGCAACCCAACAGGTTGTTGCCCCAAAAATGCTTCATCTACCTGCGTGCCAAGGCAGTGTGGTGAGCGTGGCAATATGTTCACAGATTATAATACTAACCCTTATGCAGAATTTAATATATTTGGAGACCCTTTTGCAGCATACCAGGTGATCCATTCTGGAATTCCTATCACCCTTGTTCCTCTTGATGCAACAAACACAATCCCCATCAACGAACAATTCTTTGATGCATTTGAAAAGAGTCAAGACACATATGAGGCACAGTACATTTTCAAATCCTTGAAAATGGCCCGTGATACTTGGTTTGACAACGAATTCTATTCGAGTTATTTTATGTGGGACTCTTTCGCAGCTGGTATAGCCGTCTCAATCATGAGTAAGCCCAACAACCAAAAAGGTGAAAATGAATTTGCAGAAATGGAATATATGAACATAACTGTAATCACTTCAAACAAACCATATGGGGTATCTGATGGCTCCAACCCTTTCTTTGATGGCCGAAGAGTTCCTAAATTCAATCTAGAAAAAGGTGGGGTGCATAGTGGCCATGTTCAACAAGGACTTAGAGATCCACTTTGCTTTGTGAATAATGGGAAAGGGAAATGTCAGGATGGTTACACAGCAGAGGTGAGTGGTCCAGACTCAGTGAGGGTACTTGTTGCCACAAAAGCAAAGCCTAACAAGGATGTTGGGAGCTCACTTGACAGAGAATATTTCATAAGCTTCTTGAATGTTCTGAAGCATCCACAAAATACTGGGAGGTTCAACTTCACCACACAGTTTCCTTACTACAAAGAAGTAACTTACAAGCCAGATTTTGAAAATAAAACACCGGGGAAACCTGTTGTGTTTGATATGGACATGAGTGCAGGCGATTTTCTGGCTCTATTTTACCTCCTAAAAGTGCCTGTTCAAGTAATCGACCTTAAGGCAATCATTGTGAGCCCTACTGGATGGACTAATTCAGCAACAATAGATGTCATCTATGACTTACTACACATGATGGGTCGTGACGATATCCCAGTTGGTCTAGGAGATGTTTTTGCAATGAACCAGTCAGATCCAATATTCCCACCTGTTGGAGAATGCAAGTATGTAAAAGCCATTCCCCATGGAAGTGGGGGGTTACTGGACTCTGACACTCTTTATGGTCTTGCTCGTGATCTACCGCGCAGTCCAAGAAGGTATACAGCAGAGAACTCTGTGAAGTTTGGGGCTCCTCGGGATACAGATCACCCTGAGCTCAGACAACCATTAGCCATGGAAGTTTGGAACTCTGTATTGCAAAGAACTAAACCAAGGTCTAAGATTACAGTATTGACTAATGGACCCTTGACTAATCTGGCAAAGGTTGTATCGGTGAAAAACATACGCTCAAGAATTCAGGAGGTATATGTAGTGGGGGGACACATAAGCAGCAATGTCAATGACAAAGGAGATATCTTTTCAGTTCCTTCGAACCAATATGCAGAATTCAATATGTTCCTGGATCCTTTAGCAGCCAAGATAGTGTTTGAATCAGAAGTTAACATCACACTCATCCCACTCAACACACAGCGCAGAGTAAGATCATTTTCAACCATTATAGGCGAGTTGCGTAGAACACCAAGAACACCCGAGGCTGTATTTTCTGAGCGTCTGCTGTCAAGGCTATACCGTTTAAAGCAAACCCATAACAGATATCAGCATATGGACACATTCTTGGGGGAAATTCTAGGCGCAGTTGTCTTGGCTGAGAGCCATTCAGGTCTTAATCCAAAATTTGAGGCGAAGGCAGTTAAAGTTTTGGCTGATGGCAATGAATCAAGTGATGGAAAAACTGTGGTAGATGAGAAAGGTGGAAAACTAATGAGAATTTTAAGCAGTGTGGATGCAAAGGCTTATCATAGTTTGTATGCAAAAAAGCTTGGCGATGAGAACCAATCAGCTAAGATAGGCAGCTTTGAGGAACAGCGGAGAAAATGGAGTCATCCTCACATTATAAATTAG

Predicted protein sequences of Glyma17g02440

Limit To All Plant Sequences

>Glyma17g02440.1   sequence type=predicted peptide   gene model=Glyma17g02440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRCWVAVAVAVTALIITGGGRGCAPHRILVDTDVDTDDFFALLYLLKLNTSQFQLEGISISANAWTSAGHAVNQIYDLLYMMGRDDVAVGVGGEGGILQNGTILPNVGGYLPIIEQGMTTVGGCRYRRAIPVGLGGRLDIDANYGIRKAFLPQGTRKYTPLQQPTAQEVLIEKISAGPITLLVIGAHTNIAIFLMNNPHLKKNVEHIYIMGGGVRSSNPTGCCPKNASSTCVPRQCGERGNMFTDYNTNPYAEFNIFGDPFAAYQVIHSGIPITLVPLDATNTIPINEQFFDAFEKSQDTYEAQYIFKSLKMARDTWFDNEFYSSYFMWDSFAAGIAVSIMSKPNNQKGENEFAEMEYMNITVITSNKPYGVSDGSNPFFDGRRVPKFNLEKGGVHSGHVQQGLRDPLCFVNNGKGKCQDGYTAEVSGPDSVRVLVATKAKPNKDVGSSLDREYFISFLNVLKHPQNTGRFNFTTQFPYYKEVTYKPDFENKTPGKPVVFDMDMSAGDFLALFYLLKVPVQVIDLKAIIVSPTGWTNSATIDVIYDLLHMMGRDDIPVGLGDVFAMNQSDPIFPPVGECKYVKAIPHGSGGLLDSDTLYGLARDLPRSPRRYTAENSVKFGAPRDTDHPELRQPLAMEVWNSVLQRTKPRSKITVLTNGPLTNLAKVVSVKNIRSRIQEVYVVGGHISSNVNDKGDIFSVPSNQYAEFNMFLDPLAAKIVFESEVNITLIPLNTQRRVRSFSTIIGELRRTPRTPEAVFSERLLSRLYRLKQTHNRYQHMDTFLGEILGAVVLAESHSGLNPKFEAKAVKVLADGNESSDGKTVVDEKGGKLMRILSSVDAKAYHSLYAKKLGDENQSAKIGSFEEQRRKWSHPHIIN*

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