Glyma17g02420 - SoyBase

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Report for Sequence Feature Glyma17g02420

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1560894
stop:	1564529
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15545	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:8875932-8877567 FORWARD LENGTH=337	SoyBase	E_val: 4.00E-127	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
UniRef100_I1MRC2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRC2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q93W28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g15540/dl3810w n=1 Tax=Arabidopsis thaliana RepID=Q93W28_ARATH	SoyBase	E_val: 2.00E-124	ISS

Expression Patterns of Glyma17g02420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02420

Paralog	Evidence	Comments
Glyma07g38340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g021100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g02420

Limit To All Plant Sequences

>Glyma17g02420.2   sequence type=transcript   gene model=Glyma17g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAATATAAAAAACTTCATTATTAAAGGGGAAATAAAAAACTATATAGAACACCCCATCCATGTGATGAGACAATTCTTCTACCACCAAATCAACAATCTGCAAAGATAAAATAAACAAAAAGAACTCGAAAGAAGGAGGAAAACAAAAAGAAAAATTTAGTAACTACCGATACCATATAATAATAAGAATAGTATTATTAAAAGAGAAAGGGAAGGGAAGGTAACACGCTATGGCGGCGGAATCGGGTGGTACGCCGACAAACTTTGATCTTCCCGAGGAGGTGGTGCAAGTGCTACCGTCCGATCCCTTCCAGCAGCTCGATGTGGCTCGCAAGATCACTTCCATTGCTCTATCGACACGTGTCAACACCCTCGAATCAGAGCTGTCCTCGCTTCGCGCCCAGATCGCCGACAAAGACAACCTCATCGCCGACCTTCAATCTCAGCTCGACTCCCTCGACGCTTCCCTCTCCCAAATCGCCGACAAACTCCTCCAAACCGAACAAGATAAGGAGAGCTTGCTCCAGGAGAATGCTTCGCTTTCCAACACCGTCAAAAAGCTCAATCGAGATGTCTCCAAGTTGGAGGTTTTCAGAAAGACGCTTATGCAATCACTTCAGGAGGAGGATGATAACTCTGGAGCAGCTCCAGACATTGTTGCTAAAATACAGAGTCAAGCAAGTTTGACTTCCACGTCGCAGATTGGAGGTACTTTTAACTTAACACGAACGGAAACAATTCAGGTTCTATTTGGAAGAGGGGGGAGAGAGTGATAGGGTCATAGGGAGATGAATGGAAGGAAACCTTTCTATTTTTAGTACGGACTGTAGCTTTCACCTTTCATAACCCTCCCCCTCCTGGTCTTGCACATAGACCCTCACAGTTGAGGTCCTTCAGCAGCACTTTTCTCATTTCCACCTTTGAGAGATTCTAATTTTATTG

Coding sequences of Glyma17g02420

Limit To All Plant Sequences

>Glyma17g02420.1   sequence type=CDS   gene model=Glyma17g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGGAATCGGGTGGTACGCCGACAAACTTTGATCTTCCCGAGGAGGTGGTGCAAGTGCTACCGTCCGATCCCTTCCAGCAGCTCGATGTGGCTCGCAAGATCACTTCCATTGCTCTATCGACACGTGTCAACACCCTCGAATCAGAGCTGTCCTCGCTTCGCGCCCAGATCGCCGACAAAGACAACCTCATCGCCGACCTTCAATCTCAGCTCGACTCCCTCGACGCTTCCCTCTCCCAAATCGCCGACAAACTCCTCCAAACCGAACAAGATAAGGAGAGCTTGCTCCAGGAGAATGCTTCGCTTTCCAACACCGTCAAAAAGCTCAATCGAGATGTCTCCAAGTTGGAGGTTTTCAGAAAGACGCTTATGCAATCACTTCAGGAGGAGGATGATAACTCTGGAGCAGCTCCAGACATTGTTGCTAAAATACAGAGTCAAGCAAGTTTGACTTCCACGTCGCAGATTGGAGATAATGATGTTTCATTGCCACCGTCTGTATCTTCTTCAACAGGAAATTCTTTTGCCAAGGATCATGAATCTGATGCCATAAGACCTAGAGTATCACAGAATCTCCTCTTAGCATCTCAAGGTTCCACCCCTCGGATTACTCCCCCTGGTTCCCCTCCTAGTTTGTCGGCATCAGTATCACCTACGAGAACATCTAAACCTGTATCACCACAGCGACATTCAATTTCCTTTGCAACCACAAGAGGCATGTATGATGACAGGTCTTCAATGTTTTCCTCAATGTCCTTAACTCATGGTTCAATATCAAGCTCTGATGCAGGAACAGGATCACAAACTGGACGAACACGGGTGGATGGGAAAGAGTTCTTTCGCCAAGTCAGGAACCGTTTGTCTTATGAGCAATTTGGTGCATTCTTGGCTAATGTTAAAGAATTGAATTCCCATAAACAAACAAAAGAGGAAACGCTACGGAAAGCTGATGAAATTTTTGGGCCTGAAAACAAGGATCTGTACACTATATTTGAGGGATTGATTAATCGCAATCTCCATTGA

>Glyma17g02420.2   sequence type=CDS   gene model=Glyma17g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGGAATCGGGTGGTACGCCGACAAACTTTGATCTTCCCGAGGAGGTGGTGCAAGTGCTACCGTCCGATCCCTTCCAGCAGCTCGATGTGGCTCGCAAGATCACTTCCATTGCTCTATCGACACGTGTCAACACCCTCGAATCAGAGCTGTCCTCGCTTCGCGCCCAGATCGCCGACAAAGACAACCTCATCGCCGACCTTCAATCTCAGCTCGACTCCCTCGACGCTTCCCTCTCCCAAATCGCCGACAAACTCCTCCAAACCGAACAAGATAAGGAGAGCTTGCTCCAGGAGAATGCTTCGCTTTCCAACACCGTCAAAAAGCTCAATCGAGATGTCTCCAAGTTGGAGGTTTTCAGAAAGACGCTTATGCAATCACTTCAGGAGGAGGATGATAACTCTGGAGCAGCTCCAGACATTGTTGCTAAAATACAGAGTCAAGCAAGTTTGACTTCCACGTCGCAGATTGGAGGTACTTTTAACTTAACACGAACGGAAACAATTCAGGTTCTATTTGGAAGAGGGGGGAGAGAGTGA

Predicted protein sequences of Glyma17g02420

Limit To All Plant Sequences

>Glyma17g02420.1   sequence type=predicted peptide   gene model=Glyma17g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAESGGTPTNFDLPEEVVQVLPSDPFQQLDVARKITSIALSTRVNTLESELSSLRAQIADKDNLIADLQSQLDSLDASLSQIADKLLQTEQDKESLLQENASLSNTVKKLNRDVSKLEVFRKTLMQSLQEEDDNSGAAPDIVAKIQSQASLTSTSQIGDNDVSLPPSVSSSTGNSFAKDHESDAIRPRVSQNLLLASQGSTPRITPPGSPPSLSASVSPTRTSKPVSPQRHSISFATTRGMYDDRSSMFSSMSLTHGSISSSDAGTGSQTGRTRVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTKEETLRKADEIFGPENKDLYTIFEGLINRNLH*

>Glyma17g02420.2   sequence type=predicted peptide   gene model=Glyma17g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAESGGTPTNFDLPEEVVQVLPSDPFQQLDVARKITSIALSTRVNTLESELSSLRAQIADKDNLIADLQSQLDSLDASLSQIADKLLQTEQDKESLLQENASLSNTVKKLNRDVSKLEVFRKTLMQSLQEEDDNSGAAPDIVAKIQSQASLTSTSQIGGTFNLTRTETIQVLFGRGGRE*

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