SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15520 | AT | Annotation by Michelle Graham. TAIR10: tRNA/rRNA methyltransferase (SpoU) family protein | chr4:8862829-8864366 FORWARD LENGTH=222 | SoyBase | E_val: 5.00E-119 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008173 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA methyltransferase activity | SoyBase | N/A | ISS |
| KOG0838 | KOG | RNA Methylase, SpoU family | JGI | ISS | |
| PTHR12029 | Panther | RNA METHYLASE | JGI | ISS | |
| PF00588 | PFAM | SpoU rRNA Methylase family | JGI | ISS | |
| UniRef100_G7JHW1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA guanosine-2'-O-methyltransferase n=1 Tax=Medicago truncatula RepID=G7JHW1_MEDTR | SoyBase | E_val: 6.00E-130 | ISS |
| UniRef100_I1MRB9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRB9_SOYBN | SoyBase | E_val: 3.00E-159 | ISS |
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Glyma17g02381 not represented in the dataset |
Glyma17g02381 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g020700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g02381.1 sequence type=CDS gene model=Glyma17g02381 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTGGGAGAGCTTCGTGGTGGTGCACAACATAGCAAAGAGGCACAACGTGGGAACACTTGCTCGCAGTGCCACCGCGTTCGGCGTATCAGAACTCATCCTCGTTGGTCGAAGAGATTTCAACTGTTTCGGGAGCCATGGGTCCTCCTCCCACCTCCGATTTCGACACTTCCACTCCCTCCAAGACGCTCGCAAATTCCTCAAAGACAAAGACTTTGATATTTGCGGCGTTGAGATCACAACCGATTCTCTCCCCGTAAATCAACACCCTTTTACTAAGAGCACTGCATTCCTACTCGGCAACGAGGGCACTGGTCTTTCTCCTAAGGAAATTGAGATATGCGACTTTTTCGTCTATATCCCTCAATATGGCGGTGGCACTGCTTCCTTGAATGTTACTGTAGCTGCTTCCATTGTTCTCCATCATTTCGGAGTTTGGGCAGGTTTTACTGAGAGATCTCGTGATGGAAATAAATTTGTTGTGGCTGAGAGACCCGTAAAACAGGGTGGACGTAATTACTGCACTGAAACAGAGGATTCTATCATTGAAGAGCGGAAAGCTAGAAGAGAAAATGCTGCCAATGGTTTCTTTGATGAGACTGAGAGTGGCAATTCATCTTCAAACCTCCTTGATGCATTATTTGTTGATGGTTGA
>Glyma17g02381.1 sequence type=predicted peptide gene model=Glyma17g02381 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWESFVVVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNCFGSHGSSSHLRFRHFHSLQDARKFLKDKDFDICGVEITTDSLPVNQHPFTKSTAFLLGNEGTGLSPKEIEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVWAGFTERSRDGNKFVVAERPVKQGGRNYCTETEDSIIEERKARRENAANGFFDETESGNSSSNLLDALFVDG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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