SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20790 | AT | Annotation by Michelle Graham. TAIR10: clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952613 REVERSE LENGTH=613 | SoyBase | E_val: 0 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0030131 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: clathrin adaptor complex | SoyBase | N/A | ISS |
| KOG0937 | KOG | Adaptor complexes medium subunit family | JGI | ISS | |
| PTHR11998 | Panther | CLATHRIN COAT ASSEMBLY PROTEIN | JGI | ISS | |
| PTHR11998:SF19 | Panther | JGI | ISS | ||
| PF00928 | PFAM | Adaptor complexes medium subunit family | JGI | ISS | |
| UniRef100_B6SS12 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adaptor complexes medium subunit family protein n=1 Tax=Zea mays RepID=B6SS12_MAIZE | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MRB2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRB2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g02310 not represented in the dataset |
Glyma17g02310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g019900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g02310.1 sequence type=CDS gene model=Glyma17g02310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCGGAGTAGCAGCCATGCCCAGTGGATGTAGCATCAGAGCAATATGGATTCTCAACAACCTTGACGGCGTCGTTTTTTCCCGGAGGTTTCCGGTGGTAGAGAAGCGTTGGCGAGCTGCTTGCAACTCAAACGCCCACAATGATACCCATCAAATCTTCTCTTCCTTACCCACTGACTCCGACCTCGCTGATGCTTTTCTCGACCGAAAGCATAGGGAGGGATCTGCACGAGGATTTGGCATACGAAAGAGTAACTCAACTCTGGGATCGGATTCTTGGGTGGATGATCCCATTACTCGCCATATCATCGGTCTTTACATTAGCAGAGAAGGGGAGGAAAATAAGAATCTATTGTGGCCTTTAATCTTGCACACAAAGGGCCTTTACAGTATTCTTATTCTGCCATTGGTTGAGCCTATCCATTTAAATGCATATGCAAGGTTGTGTAAAAGACCTGATTGTGGAGCTGCTCTTGGTATGGATGACGGCCTGTCTTCCCTCTTACTGGATCTTCCATCAGTAACAGGGGCATTTATGATAGCGCATGCCATTGGTGACATAATTACTGGCGACACAGTAGAACCTGAAGTGATTGTAAGTGCAGCTCCCTCTGTTGGAGGGCTGTTTGATTCACTCACTGGTAGTATAGGCATCTCTTCCAGGGCAAAACCTGTGGCCCCACCTGTTGCTTCTTCCTCCCCTTCTAGTGCAGCTGTACCAGGATCAGTTACAGCAGATGCTCCAAAAATGGGGTCTAGGTTATTGGATAAAGATGCACTCAGAACATTTATCAGTAGTTCAATGCCCTTTGGCACACCCTTGGACCTTAATTATTCCAATATTATTACCATAAAGACCAACGGCTTTTCGGCAACAGATTTGCCTCCTGCGGACCAGAAGCAGCCAGCTTGGAAACCATATTTATACAAAGGAAAGCAGAGAATGTTGTTTACAATTCATGAGATTATTCATGCTGCTCTGTATGATAGAGATGAGATTCCGGATACTATATCAGTTTCTGGTCAAATAAATTGTCGAGCTGACTTGGAAGGGTTGCCAGATGTGTCATTTCACTTGGCTGGATTGAACACAGCAAACCTTGAAGTTTTATCGTATCATCCTTGTGCTCAAGTTTCAGATCAAGGTTTGGATAAGCAAGGAGTGATGTTTTCTCCGCCATTAGGTAATTTTGTGTTGATGCGTTATCAGGCAGCTTATGCCCTTGGACCCCCCATAAAGGGATTCTATCAGTTGTCAATGGTTTCTGAGGATAAAGGTGCATTTCTATTCAAGTTGCATTTAATGGAAGGATATAAGGCTCCTTTGACAATGGAATTCTGTACTGTGACTATGCCCTTTCCTAGGAGGAGGATTGTATCTTTGGATGGGACTCCTTCTGTGGGAACAGTTTCAACTTCAGAGCACTCTGTTGAATGGAAAATTGTGACAAGTGGCCGAGGGCTTACTGGAAAAAGTATTGAAGTGACTTTCCCTGGAACAGTTAAGTTTGCACCTTGGCAAACCCAAAGGTTGTCTTCCTCTAGGTCATCCTTTGGAATCACTGCTGACGAGGATAGTGATAATGAGGCAGAAAATGCTAGTAACATGGTTAATGAAGAACATTTGATGGGGAAAATGAACAAGGGTCTTCCTCCAGTCGATTTAGAGGAGCCATTTTGCTGGCAGGCATACAATTATGCTAAAGTATCGTTCAAGATTGTTGGGGCATCAGTATCTGGAGTTGCCGTTGATCCTAAATCTGTGAGCATCTATCCAGCTGTAAAAGCACCTATGGAGTTTTCAACTCAGGTTACTTCTGGGGACTACATTCTGTGGAATACTCTTGGTAAGTGCCCACATGTTGCCACAATAAAAAGGTGA
>Glyma17g02310.1 sequence type=predicted peptide gene model=Glyma17g02310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIGVAAMPSGCSIRAIWILNNLDGVVFSRRFPVVEKRWRAACNSNAHNDTHQIFSSLPTDSDLADAFLDRKHREGSARGFGIRKSNSTLGSDSWVDDPITRHIIGLYISREGEENKNLLWPLILHTKGLYSILILPLVEPIHLNAYARLCKRPDCGAALGMDDGLSSLLLDLPSVTGAFMIAHAIGDIITGDTVEPEVIVSAAPSVGGLFDSLTGSIGISSRAKPVAPPVASSSPSSAAVPGSVTADAPKMGSRLLDKDALRTFISSSMPFGTPLDLNYSNIITIKTNGFSATDLPPADQKQPAWKPYLYKGKQRMLFTIHEIIHAALYDRDEIPDTISVSGQINCRADLEGLPDVSFHLAGLNTANLEVLSYHPCAQVSDQGLDKQGVMFSPPLGNFVLMRYQAAYALGPPIKGFYQLSMVSEDKGAFLFKLHLMEGYKAPLTMEFCTVTMPFPRRRIVSLDGTPSVGTVSTSEHSVEWKIVTSGRGLTGKSIEVTFPGTVKFAPWQTQRLSSSRSSFGITADEDSDNEAENASNMVNEEHLMGKMNKGLPPVDLEEPFCWQAYNYAKVSFKIVGASVSGVAVDPKSVSIYPAVKAPMEFSTQVTSGDYILWNTLGKCPHVATIKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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