Glyma17g02280 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g02280

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1466787
stop:	1468196
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34131	AT	Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 73B3 \| chr4:16343268-16344713 REVERSE LENGTH=481	SoyBase	E_val: 5.00E-126	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0035251	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0080043	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_I1MRA9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRA9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XZD0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavonoid glucosyltransferase n=1 Tax=Glycyrrhiza echinata RepID=Q7XZD0_GLYEC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02280

Paralog	Evidence	Comments
Glyma07g38465	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g019500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02280

Limit To All Plant Sequences

>Glyma17g02280.1   sequence type=CDS   gene model=Glyma17g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGAAAGAACAGCCACTAAAACTTTACTTCATTCCATACCTGGCAGCGGGTCACATGATCCCTCTATGCGACATAGCCCAATTCTTCGCCTCACGTGGCCACCACGTGACCATCATCACCACCCCTTCCAACGCCCAAATCCTTCACCAGTCCAAAAACTTGCGCGTCCACACCTTCGAGTTCCCTTCTCAAGAAGCAGGCCTCCCTGACGGCGTCGAAAACATATTCACCGTCACCGACCTCGAAAAATTCTACAGAATCTACGTCGCCGCCACCATACTGCTCCGCGAACCCATCGAGAGTTTCGTGGAGCGGGACCCACCGGACTGCATAGTCGCCGATTTCATGTACTACTGGGTGGATGACTTGGCAAACAGGCTCCGCATCCCTAGGCTGGTCTTCAACGGATTCTCCCTCTTCGCCATTTGCGCCATGGAGTCCGTCAAAACGCACCGCATCGATGGTCCCTTCGTCATTCCAGATTTCCCTCACCACATCACCATCAACTCAGCCCCACCCAAGGACGCGCGTGATTTCTTGGAACCCCTTCTCACGGTGGCGCTCAAGAGCAACGGTTTCATCATCAACAACTTCGCCGAGCTTGACGGTGAAGAGTACCTCCGCCACTACGAGAAAACCACGGGCCACAGGGCCTGGCACCTTGGCCCAGCGTCCCTCGTTCGCAGAACCGCTCTGGAGAAAGCAGAGAGGGGCCAGAAGAGCGTGGTGAGTGCGAACGAGTGCCTGAGTTGGCTCGACTCCAAGCGAGACAACTCGGTGGTGTACATAAGTTTTGGGACCCTCTGCTATTTTCCGGATAAACAGCTTTACGAGATTGCATGCGGGATGGAAGCATCGGGTTATGAATTCATATGGGTGGTTCCGGAGAAGAAAGGGAAGGAAGACGAGAGCGAGGAAGAGAAGGAGAAGTGGCTGCCAGAGGGTTTTGAAGAGAGGAAGAAGGGGATGATTATCAAGGGGTGGGCCCCACAGGTGCTGATTCTGGAGCACCCTGCTGTCGGTGCGTTTTTGACGCATTGTGGGTGGAACTCCACGGTGGAGGCGGTGAGTGCTGGGGTTCCCATGATTACGTGGCCGGTGCACAGCGATCAGTTCTACAACGAGAAGTTAATAACACAGGTGCGGGGTATTGGGGTGGAGGTGGGTGTAGAGGAGTGGACCCTCAGTGCTTATTTCCAGAGTCAGAAGCTGGTGGGAAGAGATCGCATAGAGAAGGCTGTGAGGAGGCTCATGGACGGTGCTGCTGAGGCTCAGCAAATCAGACGCCAAGCACTAAACTTTCAGAAAACGGCTGCAAATGCTGTTCAAGAGGGTGGCTCATCATACAATAACTTAACCTCCCTCATTCATTATCTTAAACAATTCAGAGACCGTAAATCTTAA

Predicted protein sequences of Glyma17g02280

Limit To All Plant Sequences

>Glyma17g02280.1   sequence type=predicted peptide   gene model=Glyma17g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLKEQPLKLYFIPYLAAGHMIPLCDIAQFFASRGHHVTIITTPSNAQILHQSKNLRVHTFEFPSQEAGLPDGVENIFTVTDLEKFYRIYVAATILLREPIESFVERDPPDCIVADFMYYWVDDLANRLRIPRLVFNGFSLFAICAMESVKTHRIDGPFVIPDFPHHITINSAPPKDARDFLEPLLTVALKSNGFIINNFAELDGEEYLRHYEKTTGHRAWHLGPASLVRRTALEKAERGQKSVVSANECLSWLDSKRDNSVVYISFGTLCYFPDKQLYEIACGMEASGYEFIWVVPEKKGKEDESEEEKEKWLPEGFEERKKGMIIKGWAPQVLILEHPAVGAFLTHCGWNSTVEAVSAGVPMITWPVHSDQFYNEKLITQVRGIGVEVGVEEWTLSAYFQSQKLVGRDRIEKAVRRLMDGAAEAQQIRRQALNFQKTAANAVQEGGSSYNNLTSLIHYLKQFRDRKS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain