Glyma17g02260 - SoyBase

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Report for Sequence Feature Glyma17g02260

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1453405
stop:	1456485
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31710	AT	Annotation by Michelle Graham. TAIR10: Copper amine oxidase family protein \| chr1:11349855-11355339 FORWARD LENGTH=681	SoyBase	E_val: 0	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0009308	GO-bp	Annotation by Michelle Graham. GO Biological Process: amine metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0008131	GO-mf	Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity	SoyBase	N/A	ISS
GO:0048038	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quinone binding	SoyBase	N/A	ISS
KOG1186	KOG	Copper amine oxidase	JGI		ISS
PTHR10638	Panther	COPPER/TOPAQUINONE OXIDASE	JGI		ISS
PTHR10638:SF12	Panther	COPPER AMINE OXIDASE	JGI		ISS
PF01179	PFAM	Copper amine oxidase, enzyme domain	JGI		ISS
PF02727	PFAM	Copper amine oxidase, N2 domain	JGI		ISS
PF02728	PFAM	Copper amine oxidase, N3 domain	JGI		ISS
UniRef100_I1MRA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amine oxidase n=1 Tax=Glycine max RepID=I1MRA7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MRA7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Amine oxidase n=1 Tax=Glycine max RepID=I1MRA7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02260

Paralog	Evidence	Comments
Glyma07g38480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g019300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02260

Limit To All Plant Sequences

>Glyma17g02260.1   sequence type=CDS   gene model=Glyma17g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCTCCATGGTGAAGCTTATGCTTTTCTCTGCTCTCATACTCTTGTCCTTGCAAGCAGTTGTGTCTGTAACACCACTGCATTTTCAACATCCACTAGACCCTTTAACCAAACAAGAGATAAGTCTTGTCCAAACCATAGTCCAAAACAAGTACCCAAGCTCAAGTAACAGGTTGAGCTTCCACTACATTGGACTCGACGAACCTGAAAAGGATGCCATCCTCAAATGGGAATCCATCAAACCAACTGTTATAACTGTCCCTCGCAAAGCCTTGGCCATTGTTATAATCAACAGCCAAACCCACGAGATCTTAATTGATCTAAAGGCAAGGCGCATTGTCTCCGACAATATTCACTCCGGGAATGGCTTCCCTACCCTTTCCGTTGATGAACAAGTCGTTGCCATAGAGCTGCCACTGAAATACGGTCCATTCATTGAGTCAGTGAACAAGAGAGGGCTGAACCTCTCTGAGGTGGTGTGTTCCACATTCACAATGGGGTGGTTTGGAGAAACCAAGGACAGAAGGACAGTGAGAGTGGAATGCTTCATGAAAGAAAGCAGCCCCAATATCTGGGTGAGGCCTATCAGTGGACTCACAATGGTGGTTGACCTTGAACTCATGAAGATCGTTCAGTATCACGACGGTGGCATTATACCAGTACCAACTGCCGACAACACTGAATACCGCTTTTCACATCAGAACCCACCATTCGGTCCAAGACAACATAGTCTAGCAACCCATCAACCACAGGGTCCAGGCTTCCAAATCAACGGACACAGTATTAGTTGGGCCAACTGGAAGTTCCATATTGGATTTGATCCACGTGCCGGAATTGTAATATCACTGGCATCCATTTATGATTTGGAGAAGCACAAATCTCGTAGAGTGTTATACAAAGGTTACATTTCTGAGCTGTTTGTGCCATACCAAGACCCAACAGATGATTTTTACTATAAGACTTTCTTTGATGCTGGAGAGTTTGGGTTTGGTCTCTCCACGGTCTCATTGGTGCCCAACCGTGATTGCCCATCGAATGCTCAGTTCCTAGATACATATGTTCACGCTGCTGATGGTACTCCGTTACTCATCAAGAACGCAATCTGTGTCTTTGAACAATATGGCAGCATCATGTGGCGTCACACCGAAACAGGCATTCCCAATGAATCGTTCGAAGAAACGAGAACGGAAGTCAACTTAGTGGTAAGAACTGTTGTTACCGTGGGCAACTACGATAACATCATTGATTGGGAGTTTAAAACAAGTGGCTCAATCAAACCCTCGATTGCTCTCTCGGGTATATTGGAAATTAAGGGAGTGGATATTAAGCACAAGAGTGAGATCAAGAGCGATCAACATGGTATCTTGGTGTCGGCAAACAGCATTGGTGTTTACCACGACCACTTCTACATTTACCATCTTGACCTTGACATTGATGGTGTTGCCAACTCTTTTGAGAAGACAAGTTTGAAGACTGTAAGAGTGACAGATGGAAGTTCGAAGAGGAAAAGCTATTGGACAACTGAGGTTGAAACTGCCAAGACTGAAAATGATGCAAAGATAATACTTGGGTTGAGCCCTGGTGAGCTTTCAGTGGTGAATCCTAACAAGAAAACCTCTGTTGGAAATGATGTGGGATACCGTTTGATTCCAGCAATCCCAGCTCATCCTCTTCTCACAGATGACGATTATCCACAAATACGTGGCGCTTTTACCAATTTCAATGTGTGGGTCACTCCATACAATAGGACTGAGAAGTGGGCTGGTGGACTCTACGTTGATCACAGCCATGGAGATGATACTTTAGCCGTTTGGACCAAAAAGAATAGAGACATTAACAACAAGGACATTGTGCTGTGGCACGTTGTGGGAATTCATCATGTTCCAGCACAGGAAGACTTCCCCATAATGCCATTATTGAGCACTGCATTCGAGCTCAGGCCAACCAATTTCTTCGAGAGGAATCCGGTTCTTAAAACACTTTCTCCCCCGGATGTCCAATGGCCTGGTTGCCCCAAGTAA

Predicted protein sequences of Glyma17g02260

Limit To All Plant Sequences

>Glyma17g02260.1   sequence type=predicted peptide   gene model=Glyma17g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSMVKLMLFSALILLSLQAVVSVTPLHFQHPLDPLTKQEISLVQTIVQNKYPSSSNRLSFHYIGLDEPEKDAILKWESIKPTVITVPRKALAIVIINSQTHEILIDLKARRIVSDNIHSGNGFPTLSVDEQVVAIELPLKYGPFIESVNKRGLNLSEVVCSTFTMGWFGETKDRRTVRVECFMKESSPNIWVRPISGLTMVVDLELMKIVQYHDGGIIPVPTADNTEYRFSHQNPPFGPRQHSLATHQPQGPGFQINGHSISWANWKFHIGFDPRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTDDFYYKTFFDAGEFGFGLSTVSLVPNRDCPSNAQFLDTYVHAADGTPLLIKNAICVFEQYGSIMWRHTETGIPNESFEETRTEVNLVVRTVVTVGNYDNIIDWEFKTSGSIKPSIALSGILEIKGVDIKHKSEIKSDQHGILVSANSIGVYHDHFYIYHLDLDIDGVANSFEKTSLKTVRVTDGSSKRKSYWTTEVETAKTENDAKIILGLSPGELSVVNPNKKTSVGNDVGYRLIPAIPAHPLLTDDDYPQIRGAFTNFNVWVTPYNRTEKWAGGLYVDHSHGDDTLAVWTKKNRDINNKDIVLWHVVGIHHVPAQEDFPIMPLLSTAFELRPTNFFERNPVLKTLSPPDVQWPGCPK*

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