Glyma17g02250 - SoyBase

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Report for Sequence Feature Glyma17g02250

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1446308
stop:	1447583
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18970	AT	Annotation by Michelle Graham. TAIR10: AWPM-19-like family protein \| chr5:6333714-6334539 REVERSE LENGTH=171	SoyBase	E_val: 6.00E-80	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05512	PFAM	AWPM-19-like family	JGI		ISS
UniRef100_I1MRA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRA6_SOYBN	SoyBase	E_val: 2.00E-114	ISS
UniRef100_Q8LG79	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AWPM-19-like protein n=1 Tax=Arabidopsis thaliana RepID=Q8LG79_ARATH	SoyBase	E_val: 3.00E-77	ISS

Expression Patterns of Glyma17g02250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02250

Paralog	Evidence	Comments
Glyma07g38485	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g019200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02250

Limit To All Plant Sequences

>Glyma17g02250.1   sequence type=CDS   gene model=Glyma17g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGGATCCAAATCAGTAGCCTCTATCCTCTTGGCACTGAATCTAGTGCTGTACTTCATTGTGCTTGTAATTGCTTCTTGGGCAGTGAATCATGGGATTCAAAGGTCTGGCGAAACAGCATCTGTTTTGTCCATTCCGGCTCGCATATTTCCAATATATTTCCCAATGGGAAACATGACAACTGGTTTTTTCGTAATTTTGTCTCTGGTTGCTGGTGTTGTGGGATTCACCACCTCACTCACTGGATTGCAAAACATTTTCCAGTGGAATGCTCCCAACTTACATGCAGCAGCCATGTCTTCATTGACTACATGGGCACTCACTCTACTAGCCATGGGATTTGCATGCAAAGAGATTGAACTTGGCTGGACAGACTCCAACCTGCGCACCTTAGAAACGATCACGATCATTGTAAGCGCAACACAACTATTATGCACGGGAGTTATCCATGTTGGAGTTTCAGAAGTTGTTGCGCAGAGAATGGGAGGAAGAGTATGA

Predicted protein sequences of Glyma17g02250

Limit To All Plant Sequences

>Glyma17g02250.1   sequence type=predicted peptide   gene model=Glyma17g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASGSKSVASILLALNLVLYFIVLVIASWAVNHGIQRSGETASVLSIPARIFPIYFPMGNMTTGFFVILSLVAGVVGFTTSLTGLQNIFQWNAPNLHAAAMSSLTTWALTLLAMGFACKEIELGWTDSNLRTLETITIIVSATQLLCTGVIHVGVSEVVAQRMGGRV*

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