Glyma17g02230 - SoyBase

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Report for Sequence Feature Glyma17g02230

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1423692
stop:	1427386
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18980	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr5:6334944-6337943 REVERSE LENGTH=835	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
UniRef100_D7LYJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LYJ3_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1MRA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRA4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02230

Paralog	Evidence	Comments
Glyma07g38500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g019000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02230

Limit To All Plant Sequences

>Glyma17g02230.1   sequence type=CDS   gene model=Glyma17g02230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGAGGGAAGCATTCATGTACAAGTTGATGAACTACAAAGGATGAGGCTCAGCGAAACCATCAGCATAGGCACCACCATGTTTGAGCCTCGTGGACTCAGCAGCATAGACAAGCTGGACAGTAATAATAGCACTGCCAATTCTGTGTCTTCAACAACCTCAGCACCAGAAAAGAAGCTCACCCTTTTCGCTCTTCAGCTTGCGGTGCTTGAAAAAGCAGCAACCGGGTTGGGAACTCTCGGCTTCATTTGGGCAACCGTTGTCCTTCTCGGCGGTTTCGCCATCACCTTAGAAAAAACCGACTTCTGGTTCATCACCATCATACTTGTAGTTGAAGGAACCAGGATTTTCAGCAGGAGTCATGAACTTGAATGGCAGCACCAAGCCACATGGTCCATCACTGAGAACCATCACCACCAATATGTTTCAACAGATACTACCCCAACAAGGACACGAACTAGGATGTGGGTTAGCTCAGATGTTCCACTCCTACCATATGCTAAATGGTTTTTCCTTTCGAGGCATGTCAGTAGACTTCTCTATTGGCTTCAGCTTCTTTCTGCAACGGCTTGTGTGGTTCTCTCGTTAATAAAGCTCGTCAAGCATGATTATGGAGAGGTGGCAAAGGGGGACACTGACAAGAGGAACCGCAAATCTGCTCTCTCTATCTTCTATGCCTTGGCTCTTTCGGAAGCTTTGTTGTTCCTAATGGAAAAGGCCTATTGGGAATGGCAAGTCAGCTATTGTAAACTGTTGGAAGAGGTCAACAAGGAGTGTGAGTTGGGGCCATCAGGAATGGTGTCCACTAGAAGGCTCTTCTATGATGCCTATTCAAGATGTGTCAATGGAAGCATATTTGATGGCTTGAAAATGGATATGGTAGGTTTTTCTATGGACTTGTTGGCTTCTAACTCCCCTGATGAGCAGCTCATTGGAGCAAGGATTCTTAGGCAGTTTTCAATCAGTGAAAGATTTTGTGATGACACCCTTCAAAAGATTGGAATTGACATATCAATGGTGGAGAGACTAGTTGAGATGTTGAATTGGACAGACTTCAAGGACGAAGAGATTAGGCTCTCAGCTGCTGAGATTTTGTCAAAACTAGCTGGCAAGAAGCAGAACTCTCTCCGCATAGCCGGAATACCGGGAGCTATGGAATCAATATCATCTCTTTTACAAACTAATAGGAGTGTGATTCCTGCAGCTGATGAGATTGGTGAAAAGAAACTTGTATTTGATCACCAAAATTATGGGTTCTGGACTTTTAACCACTTGGGACTCCTCATACTGAAAAAACTTGCACGTGACCTTGACAACTGTGGAAAGATTGGAAACACAAGGGGCCTCCTTCCAAAGATCATAGACTTCACACATGCTGAAGAGTGGTTGCTAAAGAGTGAAAATGTTACTCCATCCCAAGTTCTGACACTGAAGAGATCTCTGCAACTGGTGAAGATGCTGGCTAGCACAGTTGGCACCACTGGGAAACATCTTCGAAGAGAGATTGCGGAGATAGTTTTCACCATCAGCAATATTAGAGATATTTTAAGGCATGGAGAGAAGCATCCTCTTCTACAGAAACTTTGCATAGAAATTTTAACCAGTCTGGCATTGGAAGAGGATGCAACGGAAAGAATAGGGGGTACAGGTGGAGTACTTAAAGAATTGTTCAACATATTTTTCAAACACAACATACCAGAAAATCAGAAACATGTAAAAATTGTTGCTGGTGAGGCCCTTGCAATGCTGGCTTTAGAAAGCAAGAGTAACTGCCATCGAATTTTAAAGTTGAAAGTACTAGAAAAGCTCGCTGAAGCATTGAAAGATCCATTGCTCCGTGTCAATGCAGCTAGAATTCTAAGAAATTTATGCACCTATAGTGGATCAGAATGGTTCATCCAGCTAAAGGGGGTAACAACTGCAGCACCCATAATACTTCGGGCGATCATGTCAGAAGACAACAAGATACAAGAGGTGATGATTGGACTAGCAGCAAATGTTTTCAGATACATGACCTCTCATGAATCAAGCATTGTATTTGAAGAAGCTGGAATTACTGAGGCTGAACTTGCAAACAAATTAGTTCAGATTCTCAAGAAATACCAGTATCCCCCAACTAAGATTCCAAGGATAAGGAGGTTCGTAATAGAGCTGGCTATTTGGATGATGAAAGACAAAGCAGAAAACATAGAAACCTTTAAGGGTCTGGGAATGGAGGAGGTGTTGGAGGGTGTCTTAGAGACCACATCAGAACTTGAAAGCTTTAATGTTTTCTCTGGCACTGTTGGACTGAACCGGCACACTCTAACAACTCAGTCACTGGTTGAGATGGCATTGAAATTGATGGAAGATAGTTAA

Predicted protein sequences of Glyma17g02230

Limit To All Plant Sequences

>Glyma17g02230.1   sequence type=predicted peptide   gene model=Glyma17g02230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGEGSIHVQVDELQRMRLSETISIGTTMFEPRGLSSIDKLDSNNSTANSVSSTTSAPEKKLTLFALQLAVLEKAATGLGTLGFIWATVVLLGGFAITLEKTDFWFITIILVVEGTRIFSRSHELEWQHQATWSITENHHHQYVSTDTTPTRTRTRMWVSSDVPLLPYAKWFFLSRHVSRLLYWLQLLSATACVVLSLIKLVKHDYGEVAKGDTDKRNRKSALSIFYALALSEALLFLMEKAYWEWQVSYCKLLEEVNKECELGPSGMVSTRRLFYDAYSRCVNGSIFDGLKMDMVGFSMDLLASNSPDEQLIGARILRQFSISERFCDDTLQKIGIDISMVERLVEMLNWTDFKDEEIRLSAAEILSKLAGKKQNSLRIAGIPGAMESISSLLQTNRSVIPAADEIGEKKLVFDHQNYGFWTFNHLGLLILKKLARDLDNCGKIGNTRGLLPKIIDFTHAEEWLLKSENVTPSQVLTLKRSLQLVKMLASTVGTTGKHLRREIAEIVFTISNIRDILRHGEKHPLLQKLCIEILTSLALEEDATERIGGTGGVLKELFNIFFKHNIPENQKHVKIVAGEALAMLALESKSNCHRILKLKVLEKLAEALKDPLLRVNAARILRNLCTYSGSEWFIQLKGVTTAAPIILRAIMSEDNKIQEVMIGLAANVFRYMTSHESSIVFEEAGITEAELANKLVQILKKYQYPPTKIPRIRRFVIELAIWMMKDKAENIETFKGLGMEEVLEGVLETTSELESFNVFSGTVGLNRHTLTTQSLVEMALKLMEDS*

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