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Report for Sequence Feature Glyma17g02220

Feature Type:gene_model
Chromosome:Gm17
Start:1412184
stop:1417879
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g02220
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19010AT Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase 16 | chr5:6345096-6347676 REVERSE LENGTH=567 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004707GO-mf Annotation by Michelle Graham. GO Molecular Function: MAP kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0660 KOG Mitogen-activated protein kinase JGI ISS
PTHR24055Panther MITOGEN-ACTIVATED PROTEIN KINASE JGI ISS
PTHR24055:SF69Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_G7IKE2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitogen activated protein kinase 16-2 n=1 Tax=Medicago truncatula RepID=G7IKE2_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MRA3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRA3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g02220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02220
ParalogEvidenceComments
Glyma07g38510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02220 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g018800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g02220
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g02220
>Glyma17g02220.2   sequence type=CDS   gene model=Glyma17g02220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCATGATCAGAGAAAAAAGTCATCTGTAGATATAGACTTCTTTACAGAATACGGTGAAGGGAGTAGATACAAAATAGAGGAAGTAATAGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACCGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACGCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCTTACGCCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAGTTCAAAGATATATATGTTGTTTTTGAACGTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTCCAGAGCATTATCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACCGAGCAAATGTTTTTCACCGAGATCTAAAGCCAAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTCGGTCTTGCCAGAGTGGCTTTCAATGATACACCAACTGCTATATTTTGGACAGATTATGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGACATATGGAGCATTGGCTGCATTTTTGCAGAACTTTTAACTGGAAAACCTCTTTTCCCAGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTTGGAACACCGTCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTCGTGTGTTACAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATTCTTATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCTTCTGCCCAGCCAGTTACCAAGATAGAATTTGAATTCGAGAGACATAGGATAACAAAGGAAGACGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCGAAGATGTTAAAAGAACATCTAGAGGGAGCCGAGCCAACAGGATTCATGTATCCAAGTGCGGTGGATCACTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGAAAAGGTGGAACTGTTACTCCACCCGAGAGGCAACATGCATCATTACCCAGGTCATGTGTGTTGTATTCAGATAACTCAAGACCAAATATGGCTGAGGTTGCAGATGATATCTCCAGGTGTAGCATCAAAGAAGTTGAGAAGCCAGCCATGGACAGGACTGGTGGTATCCCAATGGCCAGGCTTCCTTTACAAGCTCCTCAAAATATTCAAGGTGTGATGACTGATCGTAGTATGTACTTTGCTGCTTCTCCATTCCCCCCTTTCTTTTTTCTTTCCTGCCTCTCATATGTGCATGACAGGAATTATCTTCAAAGAGTGTTGTGCTCATTGTTGAGGCTTGTTACATTTGGTTCATCATTCTTTGAACCAATAAGAATTATGTTTCTGGTTGTGTGA
Predicted protein sequences of Glyma17g02220
>Glyma17g02220.2   sequence type=predicted peptide   gene model=Glyma17g02220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPHDQRKKSSVDIDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFERMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHRANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNVDPLALRVLQRMLAFEPKDRPTAEEALADSYFKGLAKVEREPSAQPVTKIEFEFERHRITKEDVRELIYREILEYHPKMLKEHLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRSCVLYSDNSRPNMAEVADDISRCSIKEVEKPAMDRTGGIPMARLPLQAPQNIQGVMTDRSMYFAASPFPPFFFLSCLSYVHDRNYLQRVLCSLLRLVTFGSSFFEPIRIMFLVV*






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