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Report for Sequence Feature Glyma17g02140

Feature Type:gene_model
Chromosome:Gm17
Start:1362722
stop:1366349
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g02140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23600AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:8473833-8475655 FORWARD LENGTH=239 SoyBaseE_val: 3.00E-114ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG3043 KOG Predicted hydrolase related to dienelactone hydrolase JGI ISS
PTHR17630Panther DIENELACTONE HYDROLASE JGI ISS
PTHR17630:SF19Panther ENDO-1,3-1,4-BETA-D-GLUCANASE JGI ISS
PF01738PFAM Dienelactone hydrolase family JGI ISS
UniRef100_I1KN78UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KN78_SOYBN SoyBaseE_val: 2.00E-155ISS
UniRef100_Q9LUG8UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3g23600/MDB19_9 n=1 Tax=Arabidopsis thaliana RepID=Q9LUG8_ARATH SoyBaseE_val: 1.00E-111ISS

Expression Patterns of Glyma17g02140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02140
ParalogEvidenceComments
Glyma07g38560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g018000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g02140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g02140
>Glyma17g02140.2   sequence type=CDS   gene model=Glyma17g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGACCTCAATGCTGTTCAAATCCACCAAGCTTGAACCCCACTGGAGGAGGTGGCCATGTTGACAAAGTAGGTGGTATTGATTCCTATTTCACTGGATCTCCTCACTCTAAACTCGCCGTTCTTATGCTCTCCGATGTTTTTGGATATGAAGCGCCAAATTTAAGGAAGCTTGCTGACAAAGTTGGAGCTGCTGGGTATTATGTAGTTGTTCCTGACCTCTTGGATGGTGAACCCTTTAATCCTCAGAATTCGGACAGGCCCTTTCCTGCTTGGATAAAAGATTGTGTCTGTGACTTTGCCTACTGCCTAGAGAAAGGTGCTGAACCTACAAAACCCATAATTGAAGCCTTAAAAAGTAAAGGTGTTTCAGCTATTGCAGCTGTTGGTTTTTGTTGGGGTGCTAAGGTTGTTATTGAACTTGCGAAATCCAAACTTATTCAAACTGCTGTGCTATTGCATCCATCATTTATCTCCCTGGATGACATCAAGGGTGTTGATACTCCAATTGCTATACTTGGAGCCGAGATTGACCAAGTTTCTCCTCCAGAGCTTGTGAAACAATTTGAACAAGTCCTAGCTGCTAAATCTGGGATAATTTCACAATGTTATTTCTTTTTTGTTAAAATATTTCCGAAAGTTTCACACGGTTGGGCTGTGAGATATAACACTGAGGATGCAGAAGCTGTGAAGGTGGCAGAAGAGGCCCACCAGGACTTGCTGGACTGGCTTGCTAAACATCAC
Predicted protein sequences of Glyma17g02140
>Glyma17g02140.2   sequence type=predicted peptide   gene model=Glyma17g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGPQCCSNPPSLNPTGGGGHVDKVGGIDSYFTGSPHSKLAVLMLSDVFGYEAPNLRKLADKVGAAGYYVVVPDLLDGEPFNPQNSDRPFPAWIKDCVCDFAYCLEKGAEPTKPIIEALKSKGVSAIAAVGFCWGAKVVIELAKSKLIQTAVLLHPSFISLDDIKGVDTPIAILGAEIDQVSPPELVKQFEQVLAAKSGIISQCYFFFVKIFPKVSHGWAVRYNTEDAEAVKVAEEAHQDLLDWLAKHH






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