Glyma17g02110 - SoyBase

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Report for Sequence Feature Glyma17g02110

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1346724
stop:	1352613
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14240	AT	Annotation by Michelle Graham. TAIR10: CBS domain-containing protein with a domain of unknown function (DUF21) \| chr4:8204712-8207273 REVERSE LENGTH=494	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2118	KOG	Predicted membrane protein, contains two CBS domains	JGI		ISS
PTHR12064	Panther	ANCIENT CONSERVED DOMAIN PROTEIN-RELATED	JGI		ISS
PTHR12064:SF2	Panther	CYCLIN-RELATED	JGI		ISS
PF01595	PFAM	Domain of unknown function DUF21	JGI		ISS
UniRef100_G7JTY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal transporter CNNM4 n=1 Tax=Medicago truncatula RepID=G7JTY3_MEDTR	SoyBase	E_val: 7.00E-151	ISS
UniRef100_I1MR96	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MR96_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02110

Paralog	Evidence	Comments
Glyma07g38600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g017700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02110

Limit To All Plant Sequences

>Glyma17g02110.1   sequence type=CDS   gene model=Glyma17g02110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGCAGTGAGTGCGTTAATGGTGGCTCGGATGTTGACGCGGGACCACTCTCTCCCTGTCCTTTGCAGCGAAAGCATACCCTTCCGATCGGTCTGGTGGTTCGTCTATGCCGGCATCTCATGTTTCCTCGTCCTCTTCGCCGGCATCATGTCCGGTCTCACCCTCGGACTCATGTCTCTGGGTCTCGTCGACCTCGAGATTCTCGAGCGGAGTGGTTCTCCTGTTGAGAAAATGCAAGCTGCGGTCATACTTCCTGTGGTTAAAAAACAACACCAGCTTCTTGTCACTCTGCTTCTATGTAATGCTGTTGCCATGGAGGCTTTGCCGTTATACCTAGATAAACTATTCAATCAGTTTGTTGCTATCATTCTCTCTGTAACTTTCGTTCTATTTTTCGGGGAGGTTATTCCACAAGCAATTTGTAGTAGATATGGTCTTGCTGTAGGTGCCAACTTTGCATGGCTAGTGCGGATTTTAATGATTATCTGTTACCCAGTTTCTTATCCAGTTGGAAAGGTTCTGGATCACCTATTGGGGCATAATGAGGCTTTATTTAGGCGAGCTCAGTTAAAAGCCCTTGTCTCCATTCACAGCCAGGAGGCTGGGAAAGGTGGTGAGCTTACACATGATGAAACAACAATTATCAGTGGAGCACTCGATTTAACTGAGAAGACTGCAGAGGAGGCTATGACTCCTATTGAATCAACATTTTCTTTGGATGTTAATTCAAAGTTGGATTGGGAAGCAATGGGAAAAGTTCTTGCTCGCGGGCACAGCCGAGTTCCTGTCTATTCTGGAAATCCAAGGAATATTATTGGGCTTCTACTGGTCAAAAGTCTTCTTACTGTACGACCAGAAACAGAGACACCTGTCAGTGCTGTATCCATCCGGAGAATTCCACGGGTTCCATCAGATATGCCTCTCTATGATATACTAAATGAGTTCCAAAAGGGAAGTAGTCATATGGCTGCTGTTGTTAAGGCTAGGGGAAAAGGCAAAGAAACTCCACAAATCATTGATGAAGAGAAAAATGAAGAAAACGAAAGCATTGGTGGGGATTCACAGTTGACCACTCCATTGCTACAGAAGCAGGATGCAAAATCAGGAAGTGTTGTTGTTGACATAGCCAAGCCTTCAAAGCCTTCCAGCATTAATAAGCTGTCTGGTTTGCAACGTAGTGATGGCACAACAAATGGTCCCTCTTCAGAAAATATTGAAGATGGTGAAGTGATTGGCATTATCACTTTGGAAGATGTATTTGAAGAACTTCTGCAAGAAGAAATTGTTGATGAGACAGATGAATATGTGGATGTTCATAAGAGAATACGTGTTGCTGCAGCTGCAGCTGCTTCCTCAGTGGCCCGAGCTCCATCATCACGAAGGTTGACTAACCAGAAGGGAGCAGGAATCCAAAGTAAGCCAGGGCAAGCTCAGAAGAAATCTGCAGAGGAAAATGGATTGAATTCTACAAAGCAATGA

Predicted protein sequences of Glyma17g02110

Limit To All Plant Sequences

>Glyma17g02110.1   sequence type=predicted peptide   gene model=Glyma17g02110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRAVSALMVARMLTRDHSLPVLCSESIPFRSVWWFVYAGISCFLVLFAGIMSGLTLGLMSLGLVDLEILERSGSPVEKMQAAVILPVVKKQHQLLVTLLLCNAVAMEALPLYLDKLFNQFVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFAWLVRILMIICYPVSYPVGKVLDHLLGHNEALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKVLARGHSRVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKGKETPQIIDEEKNEENESIGGDSQLTTPLLQKQDAKSGSVVVDIAKPSKPSSINKLSGLQRSDGTTNGPSSENIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTNQKGAGIQSKPGQAQKKSAEENGLNSTKQ*

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