Glyma17g02080 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g02080

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1320011
stop:	1321987
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19040	AT	Annotation by Michelle Graham. TAIR10: isopentenyltransferase 5 \| chr5:6362389-6363381 REVERSE LENGTH=330	SoyBase	E_val: 2.00E-113	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0009691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0009824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: AMP dimethylallyltransferase activity	SoyBase	N/A	ISS
GO:0016765	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups	SoyBase	N/A	ISS
GO:0052622	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP dimethylallyltransferase activity	SoyBase	N/A	ISS
GO:0052623	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP dimethylallyltransferase activity	SoyBase	N/A	ISS
KOG1384	KOG	tRNA delta(2)-isopentenylpyrophosphate transferase	JGI		ISS
PTHR11088	Panther	TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED	JGI		ISS
PTHR11088:SF20	Panther	CYTOKININ SYNTHASE	JGI		ISS
PF01715	PFAM	IPP transferase	JGI		ISS
UniRef100_I1MR94	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MR94_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2MHM8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenylate isopentenyltransferase n=1 Tax=Pisum sativum RepID=Q2MHM8_PEA	SoyBase	E_val: 8.00E-156	ISS

Expression Patterns of Glyma17g02080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02080

Paralog	Evidence	Comments
Glyma07g38620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g017400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02080

Limit To All Plant Sequences

>Glyma17g02080.1   sequence type=CDS   gene model=Glyma17g02080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGTTTCGGTGTCAGCAGCGGTGTGCAAGCCCGTAGTAGCGAGTTTCAACCCGGCATCACTGAGGAATATGGACTCGCTGTCCCTTTTTCGTCACCACCGCAACAACAAGGAGAAAGTAGTGGTAATCATGGGCGCAACGGGGACAGGAAAGTCAAAACTGGCAATAGACCTCGCCACGCAATTCCCACCAGCGGAGATAGTCAACTCCGACAAAATGCAAGTGTACGAAGGCCTAGACATCACCACGAACAAAGTCACCGAGGAAGAGCGTCGCGGGGTCCTACACCATCTCCTAGGCACGGTCAACCCCAACACCAACTTCACCGCCCAAGACTTTTGCGACCACGCCACACTCGCCGTTGGCTCCATTTTGGGCCGTGACGGTTTACCCATCATTGCGGGTGGGTCCAATTCCTTCCTCGACGCGTTGGTCAACCATCACACCGAGTTTCGGTTACGCTACGAGTGCTGCTTCCTCTGGGTCGATGTTTCACTCCCCGTCCTTCATTCCTCTCTCTCCGCACGTGTGGATCGCATGATCCACGCTGGCCAGGTCCACGAGGTTCGAAAAAGCTTTCAGTACCATAACGACGATTATACCGTAGGTTTACGAAAGGCCATTGGCGTCCCTGAGTTTCATGATTTTTTCAGAGCCGAAGCCGACGGAGCCGATGAGAGGACCAAACAGCGGCTCCTCGAGGCTGCCATTGCTTCCCTCAAAACCAACAACTGCAGCCTCGCCAACCGACAGGTCCAGAAGATTCATCGTCTTTACGGCATGTGGAAAAGGAACATGCACCGCCTCGACGCCACCGAGGTTTTTCTCAAGAACGCTACTCGCCAGGAGGAGGCAGAGGAGGCGTGGGAGGATCACGTGTTGTCCAAGAGCAGAAGGATTCTCAATAAGTTTCTGTATGAGGATACGCATGTCGCTCCCGCAGGTATTGCTGCGTCAGTTGTTATTGCTTCTTCGCCGCCAGCCATGGCTGCCGCCGCCGCCGCCGCAACTCACTAG

Predicted protein sequences of Glyma17g02080

Limit To All Plant Sequences

>Glyma17g02080.1   sequence type=predicted peptide   gene model=Glyma17g02080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMVSVSAAVCKPVVASFNPASLRNMDSLSLFRHHRNNKEKVVVIMGATGTGKSKLAIDLATQFPPAEIVNSDKMQVYEGLDITTNKVTEEERRGVLHHLLGTVNPNTNFTAQDFCDHATLAVGSILGRDGLPIIAGGSNSFLDALVNHHTEFRLRYECCFLWVDVSLPVLHSSLSARVDRMIHAGQVHEVRKSFQYHNDDYTVGLRKAIGVPEFHDFFRAEADGADERTKQRLLEAAIASLKTNNCSLANRQVQKIHRLYGMWKRNMHRLDATEVFLKNATRQEEAEEAWEDHVLSKSRRILNKFLYEDTHVAPAGIAASVVIASSPPAMAAAAAAATH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain