Glyma17g02060 - SoyBase

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Report for Sequence Feature Glyma17g02060

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1286107
stop:	1288667
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06150	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:1861971-1863755 REVERSE LENGTH=594	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9M8K3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F28L1.9 protein n=1 Tax=Arabidopsis thaliana RepID=Q9M8K3_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EF51	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF51 related cluster n=1 Tax=unknown RepID=UPI000233EF51	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02060

Paralog	Evidence	Comments
Glyma07g38640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g017200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02060

Limit To All Plant Sequences

>Glyma17g02060.1   sequence type=CDS   gene model=Glyma17g02060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAGAAGGTTGTGATTTCGCCCCAACGGGCTCTATGGTCCATTCTAATGCTTCATTGGCGTGTTGGGTTGCTCACTGCTTTGGTTTTGGTTGGAATGGTTGTGGTTTGGAGCATTGATGGGTGCACAGTCAAGAACATCATTCAAGCTTGGAGGTATCAACAAGATTATCTTGCTGTAAGGTCTCATACTCCTAATTTAACTTTAACTTTTGTCTCTCCATACAGTCCTGTATATGGCAAAAAGTCCCTTCTAGTTGAGGGGCATGCAAGTTGGGTTTCAAATGAGTTAGAACCCAACTTGACTTCAAATCTCATAGCTAGATGGTCAGCTCGTGGAGGTGAGCCTTGTAAAGATTCCAAGGCTGTGGAGATTGCAATTCCTTGGTTGGATGGTGGGGAAGTGGTTGATCTATCAGCTGGATATGTGCATGAATTTGGTTTTCAAGCACTGGATGATTCAGAGAAGCCTCTTTGTGTAGGTGGAGACTACTTTGAGGCTGATCTTTCAGGGGAATCATGGAAATCTAGGCCTTTGGTGAAAGATTTCAGCAATGGTTCTTACTCAATTTCACTGCAGGTTCACCCAGATTTTGATGGGGTTTACAATCTCACTATAATCCTGCTCTATAGACACTTTGAAGGTCTGAAGTTCACCCCGTGGAAGTTTTCTTATGACCGAATGCTGCGAAATGTTGCAATCAGATTCTACAAGAGCAGTGTTCAGCTACCAGAACTGCAGGCTTGCAAGGCTTCTGATTTTGTCAGGGATGTGTGGATTGGAAGGTGGACAAGGCATGGCAAGAATGATGACTGCTCGATAGAAAATGATGGTAGGTACCGGTGCCTAGCGCCGGATTTTCCTTGCCAAGCTCCTTGGTGTGATGGTTCCTTGGGAATTCTGGAGAGTAATGGTTGGGTGTATTCAACTCATTGCTCATTCAAGTTGTATTCAGCTGAGTCTGCTTGGAATTGCTTGAAAAACAGATGGGTTTTCTTCTGGGGTGATTCAAACCATGTTGACACCATAAGAAATTTGCTCAACTTTGTTTTAGACTTGCCTGAAATATCTTCTGTCCCCAGAAGATTCGACATGAACTTTTCCAACCCAAGAGACCCTTCTCAAACAGTTAGGATTACAAGCATCTTCAATGGGCATTGGAATGAGACACAAAACTATCTGGGGTTGGATTCTCTGAAAGATGAAGGGTTTCAAGATTTGCTAAAGAAGTACTTCTCAGAAGACACAATTCCAGACACTGTGGTCATGAACTCTGGCTTACATGATGGTGTCCACTGGCACAACATAAGAGCATTCTCTGTTGGAGCTGACTATGCAGCATCCTTTTGGGGAGATGTTATGAAGACAGTGAAGCAAAGAGGGTTGGCATGGCCAAGAGTGTTTTACCGGAATACAATTGCAACTGGTGGATATGCAAGGTCACTAGCATTCAATCCTAACAAGATGGAGGTGTTCAATGGTGTGTTGTTGGAGAAATTGAAGCAAGCAGGAGTTGTTTCTGGTGTGATTGATAACTTTGATATGACATTTCCATGGCATTTTGATAACCGGTGTAATGATGGAGTTCACTATGGAAGAGCTCCAGCAAAAATGAAGTGGAGAGATGGCCAAATTGGACATCAATATTTCGTGGACCTTATGTTAGCTCATGTTCTTCTCAATGCCCTATGTGCAAGATAG

Predicted protein sequences of Glyma17g02060

Limit To All Plant Sequences

>Glyma17g02060.1   sequence type=predicted peptide   gene model=Glyma17g02060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEKVVISPQRALWSILMLHWRVGLLTALVLVGMVVVWSIDGCTVKNIIQAWRYQQDYLAVRSHTPNLTLTFVSPYSPVYGKKSLLVEGHASWVSNELEPNLTSNLIARWSARGGEPCKDSKAVEIAIPWLDGGEVVDLSAGYVHEFGFQALDDSEKPLCVGGDYFEADLSGESWKSRPLVKDFSNGSYSISLQVHPDFDGVYNLTIILLYRHFEGLKFTPWKFSYDRMLRNVAIRFYKSSVQLPELQACKASDFVRDVWIGRWTRHGKNDDCSIENDGRYRCLAPDFPCQAPWCDGSLGILESNGWVYSTHCSFKLYSAESAWNCLKNRWVFFWGDSNHVDTIRNLLNFVLDLPEISSVPRRFDMNFSNPRDPSQTVRITSIFNGHWNETQNYLGLDSLKDEGFQDLLKKYFSEDTIPDTVVMNSGLHDGVHWHNIRAFSVGADYAASFWGDVMKTVKQRGLAWPRVFYRNTIATGGYARSLAFNPNKMEVFNGVLLEKLKQAGVVSGVIDNFDMTFPWHFDNRCNDGVHYGRAPAKMKWRDGQIGHQYFVDLMLAHVLLNALCAR*

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