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Report for Sequence Feature Glyma17g02050

Feature Type:gene_model
Chromosome:Gm17
Start:1274372
stop:1280463
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g02050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19070AT Annotation by Michelle Graham. TAIR10: SNARE associated Golgi protein family | chr5:6375569-6377470 FORWARD LENGTH=280 SoyBaseE_val: 1.00E-117ISS
GO:0015824GO-bp Annotation by Michelle Graham. GO Biological Process: proline transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
PTHR12677Panther UNCHARACTERIZED JGI ISS
PF09335PFAM SNARE associated Golgi protein JGI ISS
UniRef100_I1MR91UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MR91_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9ZVS7UniRef Annotation by Michelle Graham. Most informative UniRef hit: F15K9.14 n=1 Tax=Arabidopsis thaliana RepID=Q9ZVS7_ARATH SoyBaseE_val: 5.00E-96ISS

Expression Patterns of Glyma17g02050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02050
ParalogEvidenceComments
Glyma07g38650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g017100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g02050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g02050
>Glyma17g02050.1   sequence type=CDS   gene model=Glyma17g02050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTCTCGTGGACCTCTGCTCTCAATATCACTTTTCTACTTCTCCTCGTTGCTGCTGCTGTTGTTGCTTGTTTAACTCTCCCAGTTGACAAGATTCTGAAGGACTTGTTGGAATGGATTGATCGTAATTTAGGGCCATGGGGTCCACTTGCTTTGATTGCTGCTTACATTCCTTTGACTGTCTTGTCTGTTCCAGCCTCTGTACTTACTCTTGGTGGTGGTTATCTATTTGGCCTTCCAATTGGCTTCATTGCTGACTCTATTGGTGCAACCGTTGGTGCTGTAGCTGCATTTCTTCTTGGTAGAACAATTGGGAAATCACTTGTTGTTTCTAGGTTGAAGGATTATCCACAGTTTAGATTAGTAACAATTGCAATTCAGAGATCTGGCTTTAAGATTTCAATACTCCTTCGGCTTGCTCCATTTGTACCATTTAACATGTTAAATTACCTCCTATCTGTGACTCCTGTTCCATTAGGGGAGTACACACTGGCTTCTTGGTTAGGAATGATGCCAATAACACTGGCACTTGTATATGTTGGAACTACGTTCAAGGATCTATCAGATGTGACTCGTGGCTGGAGTGAGTTCTCAAAGACTCATTTGCCTTGGATCATTTCTGGCCTGGTGATATCTGTGGTTCTAATGATATGGGTTACTAAAGTTGCCAAGTCTGCTTTAGATGAAGCCTTGGCAGAATGTGAAGATATGAATGACACTGCATCTTCACCAGAGCTACCAATTGTCACTGAAACTTTAGTAGATCTCAATCAGCCTCTCATAAATAAGACAAACCAGGATGAAGACAATCTAAATTCCAGTGTGTAA
Predicted protein sequences of Glyma17g02050
>Glyma17g02050.1   sequence type=predicted peptide   gene model=Glyma17g02050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFSWTSALNITFLLLLVAAAVVACLTLPVDKILKDLLEWIDRNLGPWGPLALIAAYIPLTVLSVPASVLTLGGGYLFGLPIGFIADSIGATVGAVAAFLLGRTIGKSLVVSRLKDYPQFRLVTIAIQRSGFKISILLRLAPFVPFNMLNYLLSVTPVPLGEYTLASWLGMMPITLALVYVGTTFKDLSDVTRGWSEFSKTHLPWIISGLVISVVLMIWVTKVAKSALDEALAECEDMNDTASSPELPIVTETLVDLNQPLINKTNQDEDNLNSSV*






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