Glyma17g02020 - SoyBase

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Report for Sequence Feature Glyma17g02020

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1257831
stop:	1260583
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06130	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr3:1853193-1854673 REVERSE LENGTH=349	SoyBase	E_val: 3.00E-45	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF16	Panther	CHLOROPLAST-TARGETED COPPER CHAPERONE	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_G8A049	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dual-specificity protein phosphatase-like protein (Fragment) n=1 Tax=Medicago truncatula RepID=G8A049_MEDTR	SoyBase	E_val: 1.00E-42	ISS
UniRef100_I1MR88	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MR88_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g02020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02020

Paralog	Evidence	Comments
Glyma07g38680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g016800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g02020

Limit To All Plant Sequences

>Glyma17g02020.1   sequence type=CDS   gene model=Glyma17g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAAAGAAGAATTCTTGAAGATACAGAAATGTGTTCTTAAAGTGAACATACACTGTGACGGGTGCAAGCACAAAGTGAAGAAAATCTTGCAGAAAATTGATGGGGTGTTTACCACAGAGATAGATGCTGAACAAGGGAAGGTGACGGTTTCAGGGAATGTGGACCCCAACGTTCTCATCAAGAAGCTTACAAAATCAGGGAAACATGCAAAACTCTGGGGTGCACCTAAACCCAACAACAACAATAATCATAATCATAATAACCAGAACCACCTTGCCGACCAGTTTAAGAACATGCATATTAACCACCACAAAGATGCTGGAGGAAATCACAACAACAAAGGCCAGCATCAGATTCAGAACCAACCCAAAGGTGGTGGTGGAAATAACCAACCCAAAGGAGGTAGTGGTGGTGGTGGTGGTCAACAACAAGGACCAACTCCTCAGCAACAACTTCAGCTGCAGCTCCAACAGCAGCAACGGCTACAGCAACAGCTGGAACAACTTCATCGGATGAAAGGACTTCAAGATCTGAACCTCCCTCAATTCAAGGACCTGAAACTAACCCCTCACAATCCCAATCTCAACCCCAACGCCAAAGCCGTTAAGTTTGATATCCCTGAGGAAGATGACGACTTCACCGACGACGAATTGGATGATTTTGACGATGACTTCGACGACTTTGACGACGACTTCGATGATGATGAAATGGACGACCTTCCTCCTAGTAAAATGAAACTACCGCCCATGATGATGAATGCTCCTCCCAAGGGTGCCAGTAATGGCGGTGATGGGAAGAAAGGAGGAGGACCCGTTCCTGTTCCTGTTCAGGTGCATGGAATCCCCGGCAATGGAGGAGGAAAGAAAGGTGGTGGTGGTGGTGGAAACAATCAGAACCAAGGTGGAGGTAACAAAAACAATGGTGGTAAAAATGGAGGTGGTGCACCGGAGGGTAAACATGGTGGTGGTGGTGGAGGAGGAAACAAGAATGGTAACGGTAACAATGGAGCGGGTAACAACAATAACAACGGGGGTAAAAAAGGAAATCCAATGGGTGGAGTTGGTGTTCAACCTATGAACGGTGGATTTCAAAACATGGGTGGTGATGGTGGTCCCCAGGTTATGATGTCTGGGCGTAATGTGGGGCCCATGAGCATGCCAATGCCCAACATCCCCGCCGTTCAAGGGCTTCCGGCCGGCCCCGTCAACGGCGGTGGGTACTTTCAAGGCGCAGGTCCCGAAGCCATGCCCGGAAACCCATTCCACCAGCAACAGCAGCAGCAGCAGCAGCAACAACAGTTACAGCAACAGCAACAGTACATGGCTGCGATGATGAACCAACAACGCGCAATCGGAAACGACAGATTCCAGCCAATGATGTACGCGCGGCCCCCTCCTGCTGTCAATTATATGTACCCTCCATACCCTTACCCTCCTCCAGATCCCTACACCCACTTTTTCAGCGATGAGAACACCTCAAGCTGCAATGTTATGTGA

Predicted protein sequences of Glyma17g02020

Limit To All Plant Sequences

>Glyma17g02020.1   sequence type=predicted peptide   gene model=Glyma17g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKEEFLKIQKCVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVSGNVDPNVLIKKLTKSGKHAKLWGAPKPNNNNNHNHNNQNHLADQFKNMHINHHKDAGGNHNNKGQHQIQNQPKGGGGNNQPKGGSGGGGGQQQGPTPQQQLQLQLQQQQRLQQQLEQLHRMKGLQDLNLPQFKDLKLTPHNPNLNPNAKAVKFDIPEEDDDFTDDELDDFDDDFDDFDDDFDDDEMDDLPPSKMKLPPMMMNAPPKGASNGGDGKKGGGPVPVPVQVHGIPGNGGGKKGGGGGGNNQNQGGGNKNNGGKNGGGAPEGKHGGGGGGGNKNGNGNNGAGNNNNNGGKKGNPMGGVGVQPMNGGFQNMGGDGGPQVMMSGRNVGPMSMPMPNIPAVQGLPAGPVNGGGYFQGAGPEAMPGNPFHQQQQQQQQQQQLQQQQQYMAAMMNQQRAIGNDRFQPMMYARPPPAVNYMYPPYPYPPPDPYTHFFSDENTSSCNVM*

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