Glyma17g02011 - SoyBase

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Report for Sequence Feature Glyma17g02011

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1240785
stop:	1243879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g02011

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23610	AT	Annotation by Michelle Graham. TAIR10: dual specificity protein phosphatase 1 \| chr3:8478280-8479641 FORWARD LENGTH=201	SoyBase	E_val: 1.00E-77	ISS
GO:0000188	GO-bp	Annotation by Michelle Graham. GO Biological Process: inactivation of MAPK activity	SoyBase	N/A	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0016311	GO-bp	Annotation by Michelle Graham. GO Biological Process: dephosphorylation	SoyBase	N/A	ISS
GO:0043405	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of MAP kinase activity	SoyBase	N/A	ISS
GO:0043407	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of MAP kinase activity	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0008138	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
GO:0033549	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase phosphatase activity	SoyBase	N/A	ISS
KOG1718	KOG	Dual specificity phosphatase	JGI		ISS
PTHR10159	Panther	DUAL SPECIFICITY PROTEIN PHOSPHATASE	JGI		ISS
PF00782	PFAM	Dual specificity phosphatase, catalytic domain	JGI		ISS
UniRef100_B9RTU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dual specificity protein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RTU2_RICCO	SoyBase	E_val: 6.00E-78	ISS
UniRef100_C6SYZ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SYZ7_SOYBN	SoyBase	E_val: 2.00E-132	ISS

Expression Patterns of Glyma17g02011

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g02011 not represented in the dataset	Glyma17g02011 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g02011

Paralog	Evidence	Comments
Glyma07g38690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g02011 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g016700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g02011

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g02011

Limit To All Plant Sequences

>Glyma17g02011.2   sequence type=transcript   gene model=Glyma17g02011   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCAAATAACAAAGGCTTTTCGCATCAGCCCATCCTGCCCCGTTACCATCGTAGCCCAATGTATATATCAAAATATTTTGATTTCGAAGATGAAAGAAAAAAAAAACGAAAACAATAATTAGTTTGTGTTTGACAATTGACACTGCAAATATTTCGCTGCAATCAAATTCTACGGTTCGTTGGGGGATCGAGAATGACCAGCTCAGCGGTTACGGAACAATTTGACAAATGCATGAAGAAGCAAGTAGAAGCAATTGCACGAGTTTTGCATTTATTTCAATCCTACAAAGAGGACAATATTCCGTGCAAAATCGACGAGGGTCTCTATTTGGGTTCGATTGCCACTGCAGCTAACAAGCCTGCTTTGAAAGACTGTAATATTACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTAACGATTTTGTCTATAAAATTATAGACGTTGTTGACAGAGATGATGAAGACTTAAAACAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCATTGTTTTGCTGGAAGATCAAGGAGTGTGACTATAGTTGTGGCATATCTGATGAAGACTCGAGGAATGAGTTTTTTTGAAGCTCTGAAACATGTGAAGAGTATACGACCAGCAGCAGGTCCCAATCAGGGTTTCATTTGTCAGCTGGAGGACTTTGAAAAGTCTCTTCAAGGTGCCAATAAATTGCATTAGTCTTATTTACAATTGCAACCTAGCTTGGTGCATTATTATAAACGCATATCATAAGTCATCTACATAAAAATGGTATATATTTACGTCTTAAATATATTTTGAACTGATACACCTCTGAAACCATCAAGATACACATTTACAATTGTAAACTTACACGTGAAAGATCTTTTCTGTAAGGAAGTGAAATTTGTAATGATTGCTTAAACTAAAAGAGTTTACTTGTACACTATGTTAATCTAGTAGAATGTGCTTCATGAAGAAAGTAAAGAGGTTTTCTTCAATTATAGATTATTGTTATTAATTGCCAAG

Coding sequences of Glyma17g02011

Limit To All Plant Sequences

>Glyma17g02011.1   sequence type=CDS   gene model=Glyma17g02011   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAGCTCAGCGGTTACGGAACAATTTGACAAATGCATGAAGAAGCAAGTAGAAGCAATTGCACGAGTTTTGCATTTATTTCAATCCTACAAAGAGGACAATATTCCGTGCAAAATCGACGAGGGTCTCTATTTGGGTTCGATTGCCACTGCAGCTAACAAGCCTGCTTTGAAAGACTGTAATATTACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTAACGATTTTGTCTATAAAATTATAGACGTTGTTGACAGAGATGATGAAGACTTAAAACAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCATTGTTTTGCTGGAAGATCAAGGAGTGTGACTATAGTTGTGGCATATCTGATGAAGACTCGAGGAATGAGTTTTTTTGAAGCTCTGAAACATGTGAAGAGTATACGACCAGCAGCAGGTCCCAATCAGGGTTTCATTTGTCAGCTGGAGGACTTTGAAAAGTCTCTTCAAGGTGCCAATAAATTGCATTAG

>Glyma17g02011.2   sequence type=CDS   gene model=Glyma17g02011   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAGCTCAGCGGTTACGGAACAATTTGACAAATGCATGAAGAAGCAAGTAGAAGCAATTGCACGAGTTTTGCATTTATTTCAATCCTACAAAGAGGACAATATTCCGTGCAAAATCGACGAGGGTCTCTATTTGGGTTCGATTGCCACTGCAGCTAACAAGCCTGCTTTGAAAGACTGTAATATTACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTAACGATTTTGTCTATAAAATTATAGACGTTGTTGACAGAGATGATGAAGACTTAAAACAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCATTGTTTTGCTGGAAGATCAAGGAGTGTGACTATAGTTGTGGCATATCTGATGAAGACTCGAGGAATGAGTTTTTTTGAAGCTCTGAAACATGTGAAGAGTATACGACCAGCAGCAGGTCCCAATCAGGGTTTCATTTGTCAGCTGGAGGACTTTGAAAAGTCTCTTCAAGGTGCCAATAAATTGCATTAG

Predicted protein sequences of Glyma17g02011

Limit To All Plant Sequences

>Glyma17g02011.1   sequence type=predicted peptide   gene model=Glyma17g02011   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSSAVTEQFDKCMKKQVEAIARVLHLFQSYKEDNIPCKIDEGLYLGSIATAANKPALKDCNITHILTVAGRIPPAHPNDFVYKIIDVVDRDDEDLKQYFNECFDFIDEAKRLGGGVLVHCFAGRSRSVTIVVAYLMKTRGMSFFEALKHVKSIRPAAGPNQGFICQLEDFEKSLQGANKLH*

>Glyma17g02011.2   sequence type=predicted peptide   gene model=Glyma17g02011   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSSAVTEQFDKCMKKQVEAIARVLHLFQSYKEDNIPCKIDEGLYLGSIATAANKPALKDCNITHILTVAGRIPPAHPNDFVYKIIDVVDRDDEDLKQYFNECFDFIDEAKRLGGGVLVHCFAGRSRSVTIVVAYLMKTRGMSFFEALKHVKSIRPAAGPNQGFICQLEDFEKSLQGANKLH*

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