SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19180 | AT | Annotation by Michelle Graham. TAIR10: E1 C-terminal related 1 | chr5:6453375-6455750 FORWARD LENGTH=454 | SoyBase | E_val: 0 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0045116 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein neddylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008641 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: small protein activating enzyme activity | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| GO:0019781 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NEDD8 activating enzyme activity | SoyBase | N/A | ISS |
| GO:0046982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity | SoyBase | N/A | ISS |
| KOG2015 | KOG | NEDD8-activating complex, catalytic component UBA3 | JGI | ISS | |
| PTHR10953 | Panther | UBIQUITIN-ACTIVATING ENZYME E1 | JGI | ISS | |
| PTHR10953:SF6 | Panther | UBIQUITIN-ACTIVATING ENZYME E1 | JGI | ISS | |
| PF00899 | PFAM | ThiF family | JGI | ISS | |
| PF02134 | PFAM | Repeat in ubiquitin-activating (UBA) protein | JGI | ISS | |
| PF08825 | PFAM | E2 binding domain | JGI | ISS | |
| PF10585 | PFAM | Ubiquitin-activating enzyme active site | JGI | ISS | |
| UniRef100_G7JHZ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NEDD8-activating enzyme E1 catalytic subunit n=1 Tax=Medicago truncatula RepID=G7JHZ9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MR79 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MR79_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g01940 not represented in the dataset |
Glyma17g01940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g38770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g016000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g01940.4 sequence type=transcript gene model=Glyma17g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGCTCTTCCACATCATTTTTTCTTTCTTCGGCTTCCACACCATTTATAAGCAAGTTGAATTATTTTATATAAACATTCTTGGTACTATTTTACAATTAATCAAATTTGTAGTTTTCAATATTTTATACAAATGCCATTCAATAATGTTATTGGTAGCTTAACCAAAGGAATCTCGAAGGAGTTTCTATCTGATATCTTTCTTGTTCTTCGACTAGAGTAAATGTGCTCCTTGAGAAGGCATGAATTGCTCTTTAGAGCTAGGGCTCTTTTCGTTGGGTTTCGGTTCATTTTTGTATAATTGATGGTAATGTCATGCCTAATTAGAATCACAACAGAAATCAAAATTTGTCTGAAACTTGTTTATGCTCATCCTCTCTCTCCTCGTCTCAGTGGAGGACAAACCACGCCGCCTCCATGGAGTTTCGCAAAGCGTGTAGAGAATCCCATCGGGTCTGTTTTGAATTCTGATGCCTAACCGCACTCAAATCGCCGTTCTCGTCGAGGAGGAGATCTCCGGCTTGAGGTCGCGCTGGAAGACGTCGCGCGAGTGGCAGTACTCGACGACAAAATCAATTGATGGAAGTACCTCCGACTCAGATCCTCCGCGAAGAGTCCCATCGCACAGCCCTCTTTCGAGGAGGAACGCAAAATGGCCCTCGTCTTGGATCACGAACTCGAGTTCCTCGACCATTTGTTGTGTTTCTTCCTCGTTTCTCCGTCGACCACTTGTTGTGTTTTTCAAATCTCGGTTTATGCTGTCTTGTGAATTGGTTCAGATCTGGGCCTTAAATACTATTTTATGGCAATTTCTGGTTGCTTAAAGCCCCAAAATGAGGAATTCATACTACTTTTCTTTATAAAATAAAGGATGAAACAGGTCATTTAGCCGATAAAGAATAAGTAAAACTCTTTCTTTTGTTGCACGTAGCCACTTCCAAGATCTGTTGAATCTGAAAATCTTGCTGTTCGAAAAATATACTTTATACTTTATATAGTAATAAAAAATTTAAATGTGTATATACATTTTATTAAAAATTTCAATTACTGTACATAATTTTTTTCACATTATTTTATATATATTGAATAGTTATTAATTAGTTTTATCACACGCTTCTAAATATATAAATTTCTCAACTTTTTGTTTTCATCTCTCATTTTTCCAATTTTTTTTATGTTTTTTTTTAACTTTTAACTAAATTTTAACAGTGAATACCAACAATTGTAATCAAGAAAATTTTATATTGTACTGTATTTTATTATTGGAATAACAAATGTTAACTTTTAAATCAAACACATATATCTTAATTATTTTAATGAGTTTAAAAGTAATTTGATCGAAATAAATAAAAGTCATGATCTACTACTACGCATCCAATAGAATAAAAGATTAGCTTAAAATTAAAGCTAAAAAAGAAAAAAGGAAAAAGTGTGCAATAGGGAGTAGACAGTAGACAGAAAATCAGAGGCGCGAGTGGCGGTGAAGGCAGCGAGGGAAGGGAAGCATCTTTAGCTCCAATGGCGGATACCTCAGGTCGATCCAGGGACCTCGACAAGCTCCTTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTGGCTTAGGTTGTGAGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAAACCTTGAGGTCATTGATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATGGAGAGAATTACTGGTGTCGAAATTGTGCCCCACTTTTGCAGGATTGAGGACAAGGAAATAGAATTTTACAATGATTTTAGCATTATTGCCCTTGGTCTTGATTCCATTGAGGCCCGGAGCTATATCAATACTGTTGCCTGTAGTTTTCTAGAGTATGATTCTGATGATAATCCTCGAGAAGAGACAATCAAACCTATGGTGGATGGTGGGACTGAAGGTTTCAAGGGCCATGCTAGGGTTATCTTGCCAGGGATCACACCGTGCTTTGAATGTACTGTCTGGCTTTTTCCACCTCAAGTTAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAGGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAGGCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGAGTTACTTATTCTCTTACCCAGGGTGTTGTGAAGAACATCATACCAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACGTATAATGGATCAGAAGGCCTCCATACTGAAGTGGCAAGATTTGAAAGGGACAAGGACTGTCTTGTGTGTGGTCCTGGTATACGTATTGAATTGGATACTTCAATCACATTGCAAAAGTTCATGGATCTTCTGGAAGAACATCCTAAGTTGCGATTATCAAAAGCTAGTATTACGCATCAAGGAAAGAATCTGTACATGCAAGCTCCCCCTGTATTGGAAGAAATGACTCGATCAAACCTGAGTCTCTCTCTTTTTAATCTCATGGGTAGATTGCCCAAGGATGTTGTGCATGTGAATGGTACAACAATCAAGAACGACCAAAAGTTCTCCTGTTCGAGAAAATTACGTGTTGTTTTCAAGGGAGTTGACGGGGTTACAGATATGGATACAGCTGGAGGAGCATAACTTACAACATCCAAACATGTTTTGCTGCTTGAATTTTTTTGGCTCTATAAGCATAATTAATGTTAGATATCACAGCTTGTTTCCAATATTGGTCAGGTAAGGTTTTACAGTTTCTACTCTGTCAGTTATTCATAGTCGAGCAAAACTGTAACACTTGATGCTGTGGATTTGTTGCCCCACAGGGTGTAGAATTTTGGCAACTCCATTTTATCATATGCGCTTAGATTGATGGAGCACAGTTAGACTATGGATATCTGATGCAATTAAGTTGCTTAATTGTTTCTAAGTGCCCGTATTTCATCTCTGAAATTCTGAAGCCGGACTTAAAATATCTTGATGGAGATGGACTGTAAATTTATTGTGGTAGAGAAATGTGTACGTGAGTATCATTTGGCAGTGAATGGTTGAGAATTTTGAACATTCTGATTACTAGTTGTTATTATTATTATTAAAGTGAGGTCAAGGCGCCTATTTAGGCTTTGGAATGAATAGGAGATGCATTAGAATTTTAGAATGGCCCAGCTTAAAGAGACTAAAAAAGATGCCCTGAGGCTGTGTTTGTTTTTTTTTGTTTTTTTGGAGGTGTTTGGTTTAGTTGTTTTCTGTTTTCATTTTCACTGAAAATAGAAAATGGTGATGAGAATCTGTTTAGTTGAATTTCTGACAACATTTTCAGTGAAAATGAAAACAAGAAACACCCAA
>Glyma17g01940.3 sequence type=CDS gene model=Glyma17g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGATACCTCAGGTCGATCCAGGGACCTCGACAAGCTCCTTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTGGCTTAGGTTGTGAGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAAACCTTGAGGTCATTGATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATGGAGAGAATTACTGGTGTCGAAATTGTGCCCCACTTTTGCAGGATTGAGGACAAGGAAATAGAATTTTACAATGATTTTAGCATTATTGCCCTTGGTCTTGATTCCATTGAGGCCCGGAGCTATATCAATACTGTTGCCTGTAGTTTTCTAGAGTATGATTCTGATGATAATCCTCGAGAAGAGACAATCAAACCTATGGTGGATGGTGGGACTGAAGGTTTCAAGGGCCATGCTAGGGTTATCTTGCCAGGGATCACACCGTGCTTTGAATGTACTGTCTGGCTTTTTCCACCTCAAGTTAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAGGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAGGCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGAGTTACTTATTCTCTTACCCAGGGTGTTGTGAAGAACATCATACCAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACGTATAATGGATCAGAAGGCCTCCATACTGAAGTGGCAAGATTTGAAAGGGACAAGGACTGTCTTGTGTGTGGTCCTGGTATACGTATTGAATTGGATACTTCAATCACATTGCAAAAGTTCATGGATCTTCTGGAAGAACATCCTAAGTTGCGATTATCAAAAGCTAGTATTACGCATCAAGGAAAGAATCTGTACATGCAAGCTCCCCCTGTATTGGAAGAAATGACTCGATCAAACCTGAGTCTCTCTCTTTTTAATCTCATGGGTAGATTGCCCAAGGATGTTGTGCATGTGAATGGTACAACAATCAAGAACGACCAAAAGTTCTCCTGTTCGAGAAAATTACGTGTTGTTTTCAAGGGAGTTGACGGGGTTACAGATATGGATACAGCTGGAGGAGCATAA >Glyma17g01940.4 sequence type=CDS gene model=Glyma17g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGATACCTCAGGTCGATCCAGGGACCTCGACAAGCTCCTTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTGGCTTAGGTTGTGAGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAAACCTTGAGGTCATTGATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATGGAGAGAATTACTGGTGTCGAAATTGTGCCCCACTTTTGCAGGATTGAGGACAAGGAAATAGAATTTTACAATGATTTTAGCATTATTGCCCTTGGTCTTGATTCCATTGAGGCCCGGAGCTATATCAATACTGTTGCCTGTAGTTTTCTAGAGTATGATTCTGATGATAATCCTCGAGAAGAGACAATCAAACCTATGGTGGATGGTGGGACTGAAGGTTTCAAGGGCCATGCTAGGGTTATCTTGCCAGGGATCACACCGTGCTTTGAATGTACTGTCTGGCTTTTTCCACCTCAAGTTAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAGGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAGGCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGAGTTACTTATTCTCTTACCCAGGGTGTTGTGAAGAACATCATACCAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACGTATAATGGATCAGAAGGCCTCCATACTGAAGTGGCAAGATTTGAAAGGGACAAGGACTGTCTTGTGTGTGGTCCTGGTATACGTATTGAATTGGATACTTCAATCACATTGCAAAAGTTCATGGATCTTCTGGAAGAACATCCTAAGTTGCGATTATCAAAAGCTAGTATTACGCATCAAGGAAAGAATCTGTACATGCAAGCTCCCCCTGTATTGGAAGAAATGACTCGATCAAACCTGAGTCTCTCTCTTTTTAATCTCATGGGTAGATTGCCCAAGGATGTTGTGCATGTGAATGGTACAACAATCAAGAACGACCAAAAGTTCTCCTGTTCGAGAAAATTACGTGTTGTTTTCAAGGGAGTTGACGGGGTTACAGATATGGATACAGCTGGAGGAGCATAA
>Glyma17g01940.3 sequence type=predicted peptide gene model=Glyma17g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADTSGRSRDLDKLLLRPGNLVGPRFEPGAELRDDLQAFAKVLVVGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERITGVEIVPHFCRIEDKEIEFYNDFSIIALGLDSIEARSYINTVACSFLEYDSDDNPREETIKPMVDGGTEGFKGHARVILPGITPCFECTVWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVHGGVAFDPDNPEHMKWVYDEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIATECSKILSNYLTYNGSEGLHTEVARFERDKDCLVCGPGIRIELDTSITLQKFMDLLEEHPKLRLSKASITHQGKNLYMQAPPVLEEMTRSNLSLSLFNLMGRLPKDVVHVNGTTIKNDQKFSCSRKLRVVFKGVDGVTDMDTAGGA* >Glyma17g01940.4 sequence type=predicted peptide gene model=Glyma17g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADTSGRSRDLDKLLLRPGNLVGPRFEPGAELRDDLQAFAKVLVVGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERITGVEIVPHFCRIEDKEIEFYNDFSIIALGLDSIEARSYINTVACSFLEYDSDDNPREETIKPMVDGGTEGFKGHARVILPGITPCFECTVWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVHGGVAFDPDNPEHMKWVYDEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIATECSKILSNYLTYNGSEGLHTEVARFERDKDCLVCGPGIRIELDTSITLQKFMDLLEEHPKLRLSKASITHQGKNLYMQAPPVLEEMTRSNLSLSLFNLMGRLPKDVVHVNGTTIKNDQKFSCSRKLRVVFKGVDGVTDMDTAGGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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