Report for Sequence Feature Glyma17g01920
Feature Type: gene_model
Chromosome: Gm17
Start: 1187729
stop: 1191100
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g01920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G14220 AT
Annotation by Michelle Graham. TAIR10: RING-H2 group F1A | chr4:8196012-8198240 FORWARD LENGTH=371
SoyBase E_val: 4.00E-67 ISS
GO:0000165 GO-bp
Annotation by Michelle Graham. GO Biological Process: MAPK cascade
SoyBase N/A ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0006612 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane
SoyBase N/A ISS
GO:0009561 GO-bp
Annotation by Michelle Graham. GO Biological Process: megagametogenesis
SoyBase N/A ISS
GO:0009617 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to bacterium
SoyBase N/A ISS
GO:0009862 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009867 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway
SoyBase N/A ISS
GO:0010310 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process
SoyBase N/A ISS
GO:0010363 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response
SoyBase N/A ISS
GO:0010498 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process
SoyBase N/A ISS
GO:0016567 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein ubiquitination
SoyBase N/A ISS
GO:0031348 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response
SoyBase N/A ISS
GO:0035304 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation
SoyBase N/A ISS
GO:0051726 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle
SoyBase N/A ISS
GO:0055046 GO-bp
Annotation by Michelle Graham. GO Biological Process: microgametogenesis
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0004842 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1493
KOG
Anaphase-promoting complex (APC), subunit 11
JGI ISS
PTHR22764 Panther
RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).
JGI ISS
PTHR22764:SF49 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_B9RTX5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTX5_RICCO
SoyBase E_val: 1.00E-89 ISS
UniRef100_I1MR76 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MR76_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g01920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g01920
Paralog Evidence Comments
Glyma07g38800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g01920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g015800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g01920
Coding sequences of Glyma17g01920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g01920.1 sequence type=CDS gene model=Glyma17g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGAATTTCACCTCTTCCTCCTCCTCCTCTTGTTCTCCCTTACCTCTATCTCTAACTATGTCACACATTTCACCTCCGTCATCTTCTGCGGCTTTCGACGACAGTTCCGAGGACGCCTGCAGCATATGTCTAGAGCCATTCAGCACCCATGACCCTGCCACCATAACCAGTTGCAAACATGAATATCATCTGCACTGTATCCTTGAATGGTTGCAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCCAGCCAAGAGCTTCTAAATGCAGTGGAAGCTGAAAAACGCTTAAGTTCAAGAACTGTATATTCACATGCATTCATGGATTCTCGTAGCCCCCTTCAACGGCTTAACAATGACCAAGATGATTCTTGTTCAGATGATTCTGATTTTGATGAACAACTTATGCAGCACCTAGTTTCTGCTGCAAGTAGAGCTCGCTATATCTGCAGAAGCAAAAGGCAGAGATCCCCCGGAGCAGGTCCTTCAGAGGTTCTTGTTTTTAACTCTTCTATACATGCTTCAGGGATGCAACCAACACTTACAACTTCACCGACTTCTGGTGTACCTTCTGCTGCTCACATTCAATCTCCAACATCCACCTTTTCCTGTGTTGGCATGGTTACAACAAATACTTCTTCCGAGAGTGACATGCCTTCCAAACCCAGAGTCATCTATAGCCAGCCATCACCTGAGAGTGCTAGGAGACTAAACACTTCTGAGATGTTCTCCTTCTCTGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCTAGATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGATTGCACGTAATGCTTCGGTGAAAGAGCTGAGTAAAGGTGTTCAGTGTGAGATGAATGCAGGCATAGCTTGCGTTGCAAGAATGATTGAACGCCTTGATCTTACCTCAAAATGGTCCTCATCTGCTCTCATCCCTGTTAAAGGGAAGTCTGTCCAAGAGAATGGAGTTTTGGTTGGCAATGTTACTTCAAATGCTTCCTCACTTGATTCTAGCTTGGTTGCTGTTGGAGTGGAAACTCCTCCTTCATGTGTTCAGAGTGGACATGATGCGGCGAGGACTTAA
Predicted protein sequences of Glyma17g01920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g01920.1 sequence type=predicted peptide gene model=Glyma17g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANFTSSSSSSCSPLPLSLTMSHISPPSSSAAFDDSSEDACSICLEPFSTHDPATITSCKHEYHLHCILEWLQRSKECPICWQLLILKDPASQELLNAVEAEKRLSSRTVYSHAFMDSRSPLQRLNNDQDDSCSDDSDFDEQLMQHLVSAASRARYICRSKRQRSPGAGPSEVLVFNSSIHASGMQPTLTTSPTSGVPSAAHIQSPTSTFSCVGMVTTNTSSESDMPSKPRVIYSQPSPESARRLNTSEMFSFSESFKSKLSAASARCKESISKNTRGLKEKLIARNASVKELSKGVQCEMNAGIACVARMIERLDLTSKWSSSALIPVKGKSVQENGVLVGNVTSNASSLDSSLVAVGVETPPSCVQSGHDAART*