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Report for Sequence Feature Glyma17g01920

Feature Type:gene_model
Chromosome:Gm17
Start:1187729
stop:1191100
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14220AT Annotation by Michelle Graham. TAIR10: RING-H2 group F1A | chr4:8196012-8198240 FORWARD LENGTH=371 SoyBaseE_val: 4.00E-67ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009561GO-bp Annotation by Michelle Graham. GO Biological Process: megagametogenesis SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0055046GO-bp Annotation by Michelle Graham. GO Biological Process: microgametogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI ISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PTHR22764:SF49Panther SUBFAMILY NOT NAMED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9RTX5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTX5_RICCO SoyBaseE_val: 1.00E-89ISS
UniRef100_I1MR76UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MR76_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g38800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g015800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g01920.1   sequence type=CDS   gene model=Glyma17g01920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATTTCACCTCTTCCTCCTCCTCCTCTTGTTCTCCCTTACCTCTATCTCTAACTATGTCACACATTTCACCTCCGTCATCTTCTGCGGCTTTCGACGACAGTTCCGAGGACGCCTGCAGCATATGTCTAGAGCCATTCAGCACCCATGACCCTGCCACCATAACCAGTTGCAAACATGAATATCATCTGCACTGTATCCTTGAATGGTTGCAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCCAGCCAAGAGCTTCTAAATGCAGTGGAAGCTGAAAAACGCTTAAGTTCAAGAACTGTATATTCACATGCATTCATGGATTCTCGTAGCCCCCTTCAACGGCTTAACAATGACCAAGATGATTCTTGTTCAGATGATTCTGATTTTGATGAACAACTTATGCAGCACCTAGTTTCTGCTGCAAGTAGAGCTCGCTATATCTGCAGAAGCAAAAGGCAGAGATCCCCCGGAGCAGGTCCTTCAGAGGTTCTTGTTTTTAACTCTTCTATACATGCTTCAGGGATGCAACCAACACTTACAACTTCACCGACTTCTGGTGTACCTTCTGCTGCTCACATTCAATCTCCAACATCCACCTTTTCCTGTGTTGGCATGGTTACAACAAATACTTCTTCCGAGAGTGACATGCCTTCCAAACCCAGAGTCATCTATAGCCAGCCATCACCTGAGAGTGCTAGGAGACTAAACACTTCTGAGATGTTCTCCTTCTCTGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCTAGATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGATTGCACGTAATGCTTCGGTGAAAGAGCTGAGTAAAGGTGTTCAGTGTGAGATGAATGCAGGCATAGCTTGCGTTGCAAGAATGATTGAACGCCTTGATCTTACCTCAAAATGGTCCTCATCTGCTCTCATCCCTGTTAAAGGGAAGTCTGTCCAAGAGAATGGAGTTTTGGTTGGCAATGTTACTTCAAATGCTTCCTCACTTGATTCTAGCTTGGTTGCTGTTGGAGTGGAAACTCCTCCTTCATGTGTTCAGAGTGGACATGATGCGGCGAGGACTTAA

>Glyma17g01920.1   sequence type=predicted peptide   gene model=Glyma17g01920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANFTSSSSSSCSPLPLSLTMSHISPPSSSAAFDDSSEDACSICLEPFSTHDPATITSCKHEYHLHCILEWLQRSKECPICWQLLILKDPASQELLNAVEAEKRLSSRTVYSHAFMDSRSPLQRLNNDQDDSCSDDSDFDEQLMQHLVSAASRARYICRSKRQRSPGAGPSEVLVFNSSIHASGMQPTLTTSPTSGVPSAAHIQSPTSTFSCVGMVTTNTSSESDMPSKPRVIYSQPSPESARRLNTSEMFSFSESFKSKLSAASARCKESISKNTRGLKEKLIARNASVKELSKGVQCEMNAGIACVARMIERLDLTSKWSSSALIPVKGKSVQENGVLVGNVTSNASSLDSSLVAVGVETPPSCVQSGHDAART*







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