Glyma17g01870 - SoyBase

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Report for Sequence Feature Glyma17g01870

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1158183
stop:	1159715
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g01870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11600	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 77, subfamily B, polypeptide 1 \| chr1:3902090-3903622 FORWARD LENGTH=510	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0156	KOG	Cytochrome P450 CYP2 subfamily	JGI		ISS
PTHR24300	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24300:SF170	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_G7JI12	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 n=2 Tax=Medicago truncatula RepID=G7JI12_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MR73	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MR73_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g01870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01870

Paralog	Evidence	Comments
Glyma07g38860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g015400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g01870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g01870

Limit To All Plant Sequences

>Glyma17g01870.1   sequence type=CDS   gene model=Glyma17g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCAACAGACATTATTCTGCTGGGCCTGGGCTTGCTCTTCGTCCGCTGGTGGTGGCGGCGCTGGTCCACCACCGGCGGCGGCCCGAAGAACCTCCCTCCAGGCCCTCCCGGGTGGCCCATCGTTGGTAACCTCTTCCAAGTGATCCTGCAGCGCCGTCACTTCATTTACGTGATCCGCGATTTACGTAAAAAATACGGCCCAATCTTCAGCATGCAGATGGGCCAGCGCACGCTGATCATCGTGAGCAGCGCGGAGCTAATCCACGAGGCACTGATCCAGCGAGGCCCATTGTTCGCGAGCAGGCCCAGAGACTCCCCCATCCGGCTGATCTTCAGCATGGGGAAGTGCGCCATCAACTCCGCCGAGTACGGCCCTCTCTGGCGCACCCTGAGGAAGAACTTCGTGACCGAGATGATCACCCCCCTGAGGATAAAACAGTGCAGCTGGATACGAAAATGGGCCATGGAGGCCCACATGAAAAGGATCCAACAAGAGGCCCGCGAGCAAGGGTTCGTCCAAGTGATGAGCAACTGCAGGCTCACCATATGCAGCATCCTCATCTGCATCTGCTTCGGCGCCAAGATCGAGGAGAAAAGAATCAAAAGCATAGAGAGCATTCTGAAGGATGTCATGCTCATCACGCTTCCCAAGCTTCCCGATTTTTTACCGGTTTTCACTCCGTTGTTCCGGCGTCAGGTGAAGGAAGCTAAGGAGTTAAGGAGGAGGCAGGTGGAGCTGCTGGCGCCGTTGATAAGGAGCAGAAAGGCTTTCGTGGAGGGGAATTTGTTGGAGCTGGGAAATCATTATGACATGGCGAGTCCCGTTGGTGCTGCTTACGTGGACTCCCTGTTTAATTTGGAGGTGCCTGGACGAGGACGCTTGGGGGAGGAGGAGCTCGTGACGCTCGTGTCGGAGATTATCAGCGCCGGCACCGACACCAGCGCCACCGCGGTAGAGTGGGCGCTGCTTCATTTGGTGATGGATCAAGACATTCAAGAGAGGTTGTATAAGGAGATAGTGGAGTGTGTGGGGAAGGATGGTGTGGTTACGGAGAGTCACGTGGAGAAGATGCCTTATTTGAGCGCCGTCGTGAAGGAGACTTTCCGGCGACACCCACCGAGCCACTTTGTGTTGTCGCATGCCGCCACGGAGGAGACGGAGCTGGGTGGGTATACGGTTCCGAAGGAGGCGAGCGTGGAGTTTTACACGGCGTGGTTGACGGAGAATCCGGATATGTGGGAGGATCCGAATGAGTTCAGACCAGAGAGGTTTATGAGTGGGGATGGGGTTGAGGTTGACGTGACGGGGACCAAAGGGGTGAGGATGATGCCATTTGGTGTAGGGAGGAGGATTTGTCCAGCGTGGACTCTGGGGATTTTGCATATAAATTTGTTGCTGGCCAAGATGGTGCAGGCTTTCCACTGGTTGCCCAATCCCAACGCTCCACCCGACCCGACTGAGACCTTCGCTTTCACTGTTGTCATGAAAAACCCTCTCAAGCCACTTATTGTGCCTCGATCCATTTAA

Predicted protein sequences of Glyma17g01870

Limit To All Plant Sequences

>Glyma17g01870.1   sequence type=predicted peptide   gene model=Glyma17g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQATDIILLGLGLLFVRWWWRRWSTTGGGPKNLPPGPPGWPIVGNLFQVILQRRHFIYVIRDLRKKYGPIFSMQMGQRTLIIVSSAELIHEALIQRGPLFASRPRDSPIRLIFSMGKCAINSAEYGPLWRTLRKNFVTEMITPLRIKQCSWIRKWAMEAHMKRIQQEAREQGFVQVMSNCRLTICSILICICFGAKIEEKRIKSIESILKDVMLITLPKLPDFLPVFTPLFRRQVKEAKELRRRQVELLAPLIRSRKAFVEGNLLELGNHYDMASPVGAAYVDSLFNLEVPGRGRLGEEELVTLVSEIISAGTDTSATAVEWALLHLVMDQDIQERLYKEIVECVGKDGVVTESHVEKMPYLSAVVKETFRRHPPSHFVLSHAATEETELGGYTVPKEASVEFYTAWLTENPDMWEDPNEFRPERFMSGDGVEVDVTGTKGVRMMPFGVGRRICPAWTLGILHINLLLAKMVQAFHWLPNPNAPPDPTETFAFTVVMKNPLKPLIVPRSI*

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