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Report for Sequence Feature Glyma17g01850

Feature Type:gene_model
Chromosome:Gm17
Start:1142238
stop:1151567
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61850AT Annotation by Michelle Graham. TAIR10: phospholipases;galactolipases | chr1:22856317-22862225 FORWARD LENGTH=1309 SoyBaseE_val: 0ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004620GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipase activity SoyBaseN/AISS
GO:0047714GO-mf Annotation by Michelle Graham. GO Molecular Function: galactolipase activity SoyBaseN/AISS
KOG4231 KOG Intracellular membrane-bound Ca2+-independent phospholipase A2 JGI ISS
PTHR24197Panther FAMILY NOT NAMED JGI ISS
PTHR24197:SF28Panther JGI ISS
PF00514PFAM Armadillo/beta-catenin-like repeat JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF01734PFAM Patatin-like phospholipase JGI ISS
UniRef100_G7JI15UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-independent phospholipase A2-gamma n=1 Tax=Medicago truncatula RepID=G7JI15_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233EF49UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EF49 related cluster n=1 Tax=unknown RepID=UPI000233EF49 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g01850 not represented in the dataset

Glyma17g01850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g38890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g015200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g01850.1   sequence type=CDS   gene model=Glyma17g01850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTGGGGATTGGGTTGGAAGAGACCTTCGGAGATCTTCCACCTCACTCTCAGCTATGGCATCGACGATCCGCCGGAGAATCTCGCCCGCACCTCAACCTCCTCCCCCTCATCCTCTTCTTCTTCGTCCTTGTCGTCTTCGTCGGGTTCTATTTCCTCAATCTTCTCGCAGGATCAGGAACTTGGATTTCGCATTGAATTGGATTGGTCGGCGTCGGACGACGAGGATCAGGTGGCGCTGAAGCTTCAGTCGCAGCTGATGGTGGCGCTGCCGATGCCGCAGGACACGGTAGTGGTTGAGCTCAGGTCGCGGGACGATGATGAGAACGTGGTGGACTTGGGAATGAAGGTTGTTAAGCGAAGGGAGCCTCTCAGAGCGGTCACAATGGCCAAGGCTGTTGCCTCCGGTCAGCAGAGCGACGGCACTGGTGTTTTGATACGCTTGTTGCGCTCCGATTTGCCTTCCTCCACGCCGCCAAAAGTTGGAGATGCCGCCGTTGCCGGTTCCGGTCACCATTGGACTAGTCTTGCTGCGCTCAGTCTCTGCGGCTGTGGCTTGTCAGTATTACCAGTAGAGCTTACACAATTGCCACGCCTTGAGAAACTCTATCTTGATAATAACAGGCTAACTGTTTTGCCACCTGAGCTTGGTGAGCTAAGAAGCTTAAAAGTGCTCAGGATTGACAACAACATGCTTGTCTCGGTGCCTGCGGAACTGAGACAGTGTATGCAGTTGGTGGAGTTGTCATTGGAACATAACAAGCTTGTTAGGCCACTTCTTGACTTCAGGGCTATGGCTGAATTACGGGTTCTTAGGCTATTTGGAAATCCTCTTGAGTTTCTTCCTGAAATTTTGCCCCTCCACAAACTTCGACACCTTTCTCTTGCAAATATTAGGATTGTGGCAGATGAAAATTTGAGATCAGTGAATGTGCAAATAGAGATGGAAAACAGTTCTTATTTCGGTGCATCTAGGCATAAACTAAGTGCTGTCTTCTCTCTTATATTCCGCTTTTCTTCTTGTCATCACCCTTTACTAGCATCTGCACTTGGAAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGCCACGTGGTTGAACAAGCCTGCTCTGCTCTTTCATCCCTTGCCTCTGATGATTCCGTGGCATTGCATCTGATGAAAGCGGACATCATGCAACCAATTGGAACAGTTCTAAAATCTGCAGGTCTGGAAGAGGTAATATCTGTATTGCAAGTTGTGGTCCAATTGGCTTTCACATCTGATACTGTGGCTGAGAAGATGTTGACCAAGGATATTTTAAAATCATTAAAAAACTTATGTGCCCATAAAGATCCAGAGGTACAAAGGCTAGCTCTGTTAGCTGTTGGGAATTTGGCCTTCAGTCTGGAAAATCGCCGCATACTTGTTTCTTCTGAAAGCTTACGAGAACTTCTCTTACGTCTGGCTGTTGCAACTGAGCCACGTGTTTATAAAGCTGCAGCTCGTGCTTTGGCAATTCTTGGAGAAAATGAAAACCTGAGGCGTGCAATAAAAGGAAGACAAGTGGGAAAGCAAGGACTTCGCATACTCTCAATGGATGGAGGAGGAATGAAAGGTCTAGCAACTGTACAAATGCTAAAGGAAATTGAAAAAGGAACTGGAAAACGAATACATGAGTTGTTTGATTTAATATGCGGCACATCAACGGGAGGAATGCTAGCTGTTGCACTTGGGATTAAGTTAATGACTTTGGAAGAATGTGAAGATATATACAAAAATCTTGGGAAGCTTGTTTTTGCTGATCCTGTTCCCAAGGACAACGAAGCTGCTACTTGGAGAGAAAAATTAGATCAACTTTATAAAAGTTCATCACAGAGTTTTAGGGTTGTTGTTCATGGATCAAAACATAGTGCAGAACAGTTCGAAAGGCTATTGAAGGAAATGTGTGCTGATGAAGATGGAGATCTAATGATAGATTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACTTTGGTGAGCATGATGCCTGCACAACCATTCGTATTTCGCAATTATCAGTACCCTGCTGGAACACCTGAGGTGGCTCTTGTTGCAACATCAGATAGCTCCGGGATCAATGTATTAGCTTCACCTATAGGTGAACAGGTTGGCTATAAGCGTAGTGCTTTCATTGGAAGCTGTAAGCATCAAGTATGGAAGGCTATCAGAGCATCATCTGCTGCTCCTTATTATCTTGATGATTTCTCGGATGATGTCAACCGCTGGCAAGATGGTGCAATAGTGGCTAACAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCTGATACAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACTAGGGTACGAAAAGGAGGTTGGCGGTATCTGGACACGGGGCAGGTGTTGATTGAGAGTTCATGCTCTGTTGATCGGGTGGAGGAAGCTTTAAGTACATTGCTACCCATGCTTCCTGAGATACAATATTTTCGTTTCAATCCAGTTGATGAACGCTGTGATATGGAACTTGATGAGACAGATCCAACTAACTGGCTAAAGTTGGAATCTGCGATTGAAGAATATATACAAAAGAATCATCACGCATTTGAAAATGTGTGTGAAAGATTGCTTCTTCCTTTCCAGCATGAGGAGAAGTGGTCAGAAAATCTGAGATCTAAATTACCCAAGACAGAGGAATCACTTAAGGGTGCCGATGGCCCCACCTTAGGGTGGAGGCGTAATGTACTACTTGTTGAAGCTTCACATAATCCAGATTCTGGAAGAGTGATCCACCATGCCCGGGAACTTGAGTCATTTTGTGCTCGTAATGGCATACGTTTATCCCTAATGCAGGGTTTGTCTGGGATTGTAAAGACAGTGCCATCAACAACATTCCCAACTCCATTTCAATCACCTCTGTTTACAGGAAGCTTTCCTTCGAGTCCCTGCATGTTTAGCCCTGATCTTGGTCAGAGGATTGGACGAATTGATCTGGTCCCACCTTTAAGTTTAGATGGTCAATTAGGGAAAGCAATTGCATCGCCTCCAATGTCTCCTCGAGGACTTAGACAGCTCTCTTTGCCCGTCAAATCATTGCATGAGAAATTGCAGAATTCACCGCAAGTGGGTGTTATACATTTGGCTCTTCAAAATAACTCAGATGGCTTAATTGTTAGTTGGCACAATGATGTATTTGTTGTGGCTGAACCTGGAGAGCTCGCTGAGAAATTTCTACAAAATGTTAAATTCAGTTTGTTGTCAACAATGAGGAGCCATCGCAGAAAGGGCGCATCTCTCCTGGCCAATATTTCTACTATTTCTGATTTAGTTGCCTTTAAACCTTATTTCCAAATTGGAGGCATTGTCCACCGTTATCTAGGCCGTCAAACCCTTGTTATGGAAGATGATCAAGAAATTGCTTCATATATGTTTCGTAGGACTGTCCCTTCTATGCACTTATCCCCTGAGGATGTACGATGGATGATTGGAGCTTGGAGAGACAGGATCATAATGTGCACAGGGACATATGGGCCTACTCCTGCCCTTATCAAGGCCTTTCTGGACTCCGGTGCCAAAGCTATTGTTTGTTCTTCAAGTGAACCTCCAGAGTCTCAGTCGATCACTGTTGATGGTCACATAGAGTGGAATGTGATGGAAAATGGGAAGTTTGAAATTGGAGAAGATGAAGCAGATGATGAGAACGTACCGGCTAGTCCGGTAAGCGACTGGGAAGATAGTGACGCTGAGAGAAATGTGAACCGCACCTTTTCTTTTTGGGACGATGATGAAGAGGAACTGTCACATTTTGTTTGTCACTTGTATGATTCATTATTCAGGGAAGGTGCTAGTATTAATGTTGCTTTGCAACATGCACTTGCCTCGTATCGAAGAATGAGGTATGTGTGCCATCTCCCCGGCATACAATAA

>Glyma17g01850.1   sequence type=predicted peptide   gene model=Glyma17g01850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWGLGWKRPSEIFHLTLSYGIDDPPENLARTSTSSPSSSSSSSLSSSSGSISSIFSQDQELGFRIELDWSASDDEDQVALKLQSQLMVALPMPQDTVVVELRSRDDDENVVDLGMKVVKRREPLRAVTMAKAVASGQQSDGTGVLIRLLRSDLPSSTPPKVGDAAVAGSGHHWTSLAALSLCGCGLSVLPVELTQLPRLEKLYLDNNRLTVLPPELGELRSLKVLRIDNNMLVSVPAELRQCMQLVELSLEHNKLVRPLLDFRAMAELRVLRLFGNPLEFLPEILPLHKLRHLSLANIRIVADENLRSVNVQIEMENSSYFGASRHKLSAVFSLIFRFSSCHHPLLASALGKIMQDQGNRVFVGKDENAVRQLISMISSDNCHVVEQACSALSSLASDDSVALHLMKADIMQPIGTVLKSAGLEEVISVLQVVVQLAFTSDTVAEKMLTKDILKSLKNLCAHKDPEVQRLALLAVGNLAFSLENRRILVSSESLRELLLRLAVATEPRVYKAAARALAILGENENLRRAIKGRQVGKQGLRILSMDGGGMKGLATVQMLKEIEKGTGKRIHELFDLICGTSTGGMLAVALGIKLMTLEECEDIYKNLGKLVFADPVPKDNEAATWREKLDQLYKSSSQSFRVVVHGSKHSAEQFERLLKEMCADEDGDLMIDSAVKNVPKVFVVSTLVSMMPAQPFVFRNYQYPAGTPEVALVATSDSSGINVLASPIGEQVGYKRSAFIGSCKHQVWKAIRASSAAPYYLDDFSDDVNRWQDGAIVANNPTIFAIREAQLLWPDTKIDCLVSVGCGSVRTRVRKGGWRYLDTGQVLIESSCSVDRVEEALSTLLPMLPEIQYFRFNPVDERCDMELDETDPTNWLKLESAIEEYIQKNHHAFENVCERLLLPFQHEEKWSENLRSKLPKTEESLKGADGPTLGWRRNVLLVEASHNPDSGRVIHHARELESFCARNGIRLSLMQGLSGIVKTVPSTTFPTPFQSPLFTGSFPSSPCMFSPDLGQRIGRIDLVPPLSLDGQLGKAIASPPMSPRGLRQLSLPVKSLHEKLQNSPQVGVIHLALQNNSDGLIVSWHNDVFVVAEPGELAEKFLQNVKFSLLSTMRSHRRKGASLLANISTISDLVAFKPYFQIGGIVHRYLGRQTLVMEDDQEIASYMFRRTVPSMHLSPEDVRWMIGAWRDRIIMCTGTYGPTPALIKAFLDSGAKAIVCSSSEPPESQSITVDGHIEWNVMENGKFEIGEDEADDENVPASPVSDWEDSDAERNVNRTFSFWDDDEEELSHFVCHLYDSLFREGASINVALQHALASYRRMRYVCHLPGIQ*







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