Glyma17g01820 - SoyBase

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Report for Sequence Feature Glyma17g01820

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1129701
stop:	1134368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g01820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21790	AT	Annotation by Michelle Graham. TAIR10: tobamovirus multiplication 1 \| chr4:11569924-11572163 FORWARD LENGTH=291	SoyBase	E_val: 1.00E-155	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0046786	GO-bp	Annotation by Michelle Graham. GO Biological Process: viral replication complex formation and maintenance	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
PF06454	PFAM	Protein of unknown function (DUF1084)	JGI		ISS
UniRef100_I1MR67	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MR67_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q402F4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tobamovirus multiplication 1 n=1 Tax=Nicotiana tabacum RepID=Q402F4_TOBAC	SoyBase	E_val: 5.00E-157	ISS

Expression Patterns of Glyma17g01820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01820

Paralog	Evidence	Comments
Glyma07g38920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g015000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g01820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g01820

Limit To All Plant Sequences

>Glyma17g01820.2   sequence type=transcript   gene model=Glyma17g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGCTTTTTATATACAAAATTGACTGTAAAAGGAATCTAACATATATTATCTAAATTAACTAGACTTGAAATCTAATGATGGAATCACAACATGACATATTGTGTCTGGTATTATCTCTCTCTTGAGAGTTGAGAGCATGGAGATTGGTCCTCTCTTCCCCAACTTAGCGTGGTGGCAGCAAGTCAACGCCTCTACTTGCTGCCAGGACGCTGTTTTCTACTTCCTATGCGCTGCTTATGCTCTTGTCTCTTCCACCGCTTTGGTACATACATCTCCTTCTTTATTAACTACTCATTCATTTTTGTCTTTTTTATTATTCTGCTCTGTAGATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAGTGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTAAGGTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAGGCAAGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAATGCTGCCATGTATCTTATCCAGGTTTGTATTTGGATATACCTCTGGATAGATGACAACAATGTTGTGCAGTTCATTGGAGAGATATTTATTGCAGTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAGATTATTTTTCATGCTGAGACGCTTCCCAATTGAATCTAAAGGAAGAAGGAAGAAACTCAATGAGGTTGGATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTGCCCCCAAAGAGAATATCAGCCCAATATCATCCCATCCGTTAACTGCTGTTCATATTGGATCCTAATTTATTAATTTATCTGCCCATTGTTTATTATTTCAATGGTTCTTGGTTAGATGGATACTTTTAAGCTCATCAGGAAAAACAGATAAAGAAAAAGGATGCAGATAAAGACTCATGGCAGCAGTTCTTATGTGAGTGATACTCAGCAGTTGCTACCTAGGAAGGAAATTTTGGATTCAGGTTTTGTACGGTATACATGCAATGACAAGCCTCAAGAACTTGAGTTATTCTCTGCAGTTTGGATGATGTAGTGTTTCGGGCACAAGCTTGTCAATGACGCATCTACTTCAACATTTTATTTTATACAAAGTTGAGTGTCTCTTAATCTTAAATATTCTGAATTTGTTTATTAGTTAGAAATACTTCAATTTGAACAAAATGAACATTGTCTCTTGAATTATATGAAGGGTCTCGCTTGGAATCTTTTTGAGTTCTTGATTTTATGCGGCAAAAATAAAAACTAAAATGATGTGCTTTAGGG

>Glyma17g01820.3   sequence type=transcript   gene model=Glyma17g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGCTTTTTATATACAAAATTGACTGTAAAAGGAATCTAACATATATTATCTAAATTAACTAGACTTGAAATCTAATGATGGAATCACAACATGACATATTGTGTCTGGTATTATCTCTCTCTTGAGAGTTGAGAGCATGGAGATTGGTCCTCTCTTCCCCAACTTAGCGTGGTGGCAGCAAGTCAACGCCTCTACTTGCTGCCAGGACGCTGTTTTCTACTTCCTATGCGCTGCTTATGCTCTTGTCTCTTCCACCGCTTTGGTACATACATCTCCTTCTTTATTAACTACTCATTCATTTTTGTCTTTTTTATTATTCTGCTCTGTAGATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAGGCAAGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAATGCTGCCATGTATCTTATCCAGGTTTGTATTTGGATATACCTCTGGATAGATGACAACAATGTTGTGCAGTTCATTGGAGAGATATTTATTGCAGTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAGATTATTTTTCATGCTGAGACGCTTCCCAATTGAATCTAAAGGAAGAAGGAAGAAACTCAATGAGGTTGGATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTGCCCCCAAAGAGAATATCAGCCCAATATCATCCCATCCGTTAACTGCTGTTCATATTGGATCCTAATTTATTAATTTATCTGCCCATTGTTTATTATTTCAATGGTTCTTGGTTAGATGGATACTTTTAAGCTCATCAGGAAAAACAGATAAAGAAAAAGGATGCAGATAAAGACTCATGGCAGCAGTTCTTATGTGAGTGATACTCAGCAGTTGCTACCTAGGAAGGAAATTTTGGATTCAGGTTTTGTACGGTATACATGCAATGACAAGCCTCAAGAACTTGAGTTATTCTCTGCAGTTTGGATGATGTAGTGTTTCGGGCACAAGCTTGTCAATGACGCATCTACTTCAACATTTTATTTTATACAAAGTTGAGTGTCTCTTAATCTTAAATATTCTGAATTTGTTTATTAGTTAGAAATACTTCAATTTGAACAAAATGAACATTGTCTCTTGAATTATATGAAGGGTCTCGCTTGGAATCTTTTTGAGTTCTTGATTTTATGCGGCAAAAATAAAAACTAAAATGATGTGCTTTAGGG

Coding sequences of Glyma17g01820

Limit To All Plant Sequences

>Glyma17g01820.1   sequence type=CDS   gene model=Glyma17g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTGGTCCTCTCTTCCCCAACTTAGCGTGGTGGCAGCAAGTCAACGCCTCTACTTGCTGCCAGGACGCTGTTTTCTACTTCCTATGCGCTGCTTATGCTCTTGTCTCTTCCACCGCTTTGATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAGTGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTAAGGTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAGGCAAGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAATGCTGCCATGTATCTTATCCAGGTTTGTATTTGGATATACCTCTGGATAGATGACAACAATGTTGTGCAGTTCATTGGAGAGATATTTATTGCAGTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAGATTATTTTTCATGCTGAGACGCTTCCCAATTGAATCTAAAGGAAGAAGGAAGAAACTCAATGAGGTTGGATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTGCCCCCAAAGAGAATATCAGCCCAATATCATCCCATCCGTTAA

>Glyma17g01820.2   sequence type=CDS   gene model=Glyma17g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTCATTGTCAACGGAGTGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTAAGGTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAGGCAAGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAATGCTGCCATGTATCTTATCCAGGTTTGTATTTGGATATACCTCTGGATAGATGACAACAATGTTGTGCAGTTCATTGGAGAGATATTTATTGCAGTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAGATTATTTTTCATGCTGAGACGCTTCCCAATTGAATCTAAAGGAAGAAGGAAGAAACTCAATGAGGTTGGATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTGCCCCCAAAGAGAATATCAGCCCAATATCATCCCATCCGTTAA

>Glyma17g01820.3   sequence type=CDS   gene model=Glyma17g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTCATTGTCAACGGAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAGGCAAGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAATGCTGCCATGTATCTTATCCAGGTTTGTATTTGGATATACCTCTGGATAGATGACAACAATGTTGTGCAGTTCATTGGAGAGATATTTATTGCAGTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAGATTATTTTTCATGCTGAGACGCTTCCCAATTGAATCTAAAGGAAGAAGGAAGAAACTCAATGAGGTTGGATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATGCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTGCCCCCAAAGAGAATATCAGCCCAATATCATCCCATCCGTTAA

Predicted protein sequences of Glyma17g01820

Limit To All Plant Sequences

>Glyma17g01820.1   sequence type=predicted peptide   gene model=Glyma17g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIGPLFPNLAWWQQVNASTCCQDAVFYFLCAAYALVSSTALIQLVRIQVRVPEYGWTTQKIFHLMNFIVNGVRAVVFGLHKLVFLLHPKVLISVLLDLPGLLFFSTYTLLVLFWVEIYHQARGLPTDKLKIVYISVNAAMYLIQVCIWIYLWIDDNNVVQFIGEIFIAVVSFMAALGFLIYGGRLFFMLRRFPIESKGRRKKLNEVGSVTTICFTCFLIRCIMGFLSAFDSDASLNVLDHPILDLIYYMLVEVLPSALVLYILRKLPPKRISAQYHPIR*

>Glyma17g01820.2   sequence type=predicted peptide   gene model=Glyma17g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFIVNGVRAVVFGLHKLVFLLHPKVLISVLLDLPGLLFFSTYTLLVLFWVEIYHQARGLPTDKLKIVYISVNAAMYLIQVCIWIYLWIDDNNVVQFIGEIFIAVVSFMAALGFLIYGGRLFFMLRRFPIESKGRRKKLNEVGSVTTICFTCFLIRCIMGFLSAFDSDASLNVLDHPILDLIYYMLVEVLPSALVLYILRKLPPKRISAQYHPIR*

>Glyma17g01820.3   sequence type=predicted peptide   gene model=Glyma17g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFIVNGDLPGLLFFSTYTLLVLFWVEIYHQARGLPTDKLKIVYISVNAAMYLIQVCIWIYLWIDDNNVVQFIGEIFIAVVSFMAALGFLIYGGRLFFMLRRFPIESKGRRKKLNEVGSVTTICFTCFLIRCIMGFLSAFDSDASLNVLDHPILDLIYYMLVEVLPSALVLYILRKLPPKRISAQYHPIR*

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