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Report for Sequence Feature Glyma17g01771

Feature Type:gene_model
Chromosome:Gm17
Start:1090235
stop:1090777
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g01771
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60440AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299 SoyBaseE_val: 2.00E-35ISS
GO:0009960GO-bp Annotation by Michelle Graham. GO Biological Process: endosperm development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
KOG0014 KOG MADS box transcription factor JGI ISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF19Panther MADS BOX PROTEIN JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
UniRef100_G7ZYX8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Myocyte-specific enhancer factor 2A n=1 Tax=Medicago truncatula RepID=G7ZYX8_MEDTR SoyBaseE_val: 2.00E-63ISS
UniRef100_UPI000233EF43UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EF43 related cluster n=1 Tax=unknown RepID=UPI000233EF43 SoyBaseE_val: 5.00E-130ISS

Expression Patterns of Glyma17g01771
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g01771 not represented in the dataset
Glyma17g01771 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g01771 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g014300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g01771
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g01771
>Glyma17g01771.1   sequence type=CDS   gene model=Glyma17g01771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATGTTTAAGCAGAATCAGAAGAAGAAAAACACTGGCCGGAAAAAGATTGAGATCAAGAAGCTTGAAAAGGCTAGCAACAAGCAAGTGACGTTCTCAAAAAGAAGAACAGGACTATTCAAAAAAGCCAGTGAACTCTGCATTTTATGCAATGCTTATGTAGCCATAATTGTGTTTTCTCCTGCTGACAAATTGTTCTGCTTTGGCCATCCAGACATCGACTCCATAATTGGTCGCTATCTCAAAGGAGACAACAACGCAGAGTTTGAACCAGCAGCAAAGTCATCAAAAGAAAAATCAGTGTCATATGAGGAGTGTAACAGACAGTACGAAGCGGCCACAAAGAAGTTGGAGTTGGAAAAGAAGAACTTGGCACAAACTGAGATTTTGGCTAAGGGTTGGAACAGAAGGTGGTGGAACGATCCCATTGATCAGATGAGTGAGCAACAGTTGGAGCAGTTTATGATGTCCATTTACGAGTTAAGGAAAAAACTGACAGAAAGAACAGGTGAATTGATGATGCTTGGGACCATGACGTAG
Predicted protein sequences of Glyma17g01771
>Glyma17g01771.1   sequence type=predicted peptide   gene model=Glyma17g01771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMFKQNQKKKNTGRKKIEIKKLEKASNKQVTFSKRRTGLFKKASELCILCNAYVAIIVFSPADKLFCFGHPDIDSIIGRYLKGDNNAEFEPAAKSSKEKSVSYEECNRQYEAATKKLELEKKNLAQTEILAKGWNRRWWNDPIDQMSEQQLEQFMMSIYELRKKLTERTGELMMLGTMT*






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