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Report for Sequence Feature Glyma17g01710

Feature Type:gene_model
Chromosome:Gm17
Start:1033016
stop:1037774
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g01710
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04670AT Annotation by Michelle Graham. TAIR10: Met-10+ like family protein / kelch repeat-containing protein | chr4:2367603-2371990 FORWARD LENGTH=995 SoyBaseE_val: 6.00E-162ISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0006869GO-bp Annotation by Michelle Graham. GO Biological Process: lipid transport SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0031591GO-bp Annotation by Michelle Graham. GO Biological Process: wybutosine biosynthetic process SoyBaseN/AISS
GO:0032204GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance SoyBaseN/AISS
GO:0043247GO-bp Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
PTHR23245Panther UNCHARACTERIZED JGI ISS
PTHR23245:SF27Panther SUBFAMILY NOT NAMED JGI ISS
PF01344PFAM Kelch motif JGI ISS
PF02475PFAM Met-10+ like-protein JGI ISS
PF07646PFAM Kelch motif JGI ISS
UniRef100_G7JJ74UniRef Annotation by Michelle Graham. Most informative UniRef hit: tRNA wybutosine-synthesizing protein 2/3/4 n=1 Tax=Medicago truncatula RepID=G7JJ74_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002338F0CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338F0C related cluster n=1 Tax=unknown RepID=UPI0002338F0C SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g01710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01710
ParalogEvidenceComments
Glyma07g39030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01710 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g013500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g01710
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g01710
>Glyma17g01710.2   sequence type=CDS   gene model=Glyma17g01710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCAAACATTTATGTATTTGGGGGGCTTGATAATGATATTATCTTTTCTTCCTTTCGTGTTTTTGACACAAACAATTTACACTGGAAAGAAATACCAGTTTCTGGGGACTGGCCATGTGCACGCCACTCACATGCTATGGTGGCATCTGGTTGTCAGATTTTCATGTTTGGTGGATACAATGGTGGGAAAGCACTTGGGAATTTGTATAGCTTTGATGTTCAGAAAGGTCAATGGATGAAGGAAAGGACAGATGGATGGAATCCACATGCAAGGTTCTCCCACTCAATTTTTGTCTATAAGAATTATCTTGGAGTTCTTGGTGGTTGTCCTGTTAGACAACATTGCCAAGAGCTGGCTTTACTTGATTTGAAGCTTCATTTATGGAAGCATGTTACCCTCAATTCAGTAGGTAAAGATTCGTTTGTGTGCAGTACAGCCAATGTCATGGGTGATGATGTTGTTGTAGTTGGTAGTGGTGCATCATGCTATGCATTTGGAACCAAGTTCAGTGAGCCAGCAAAACTCAGCTTGCTCCATTTAATGCATTCACATGATGAGCCAGTAAAAAATCAAAGAAAGCATATAATTAACCAAAATGAAGGGACAAACAGGAATAACATTGAAAATTCTTTTGGACCCCAACTTGAACATGCACCAAATCTATCTGAAGATGAAAGTTCACATTTTAATGGTAACATACCTTGCTTGAATGATCAAAGCCAGATGATTGTATTGCATTATGTTTTGCAACTAGAAAAGAAATATGCAAAATTGGGAAAAGATATATTGAAAAAATTTGGATGGTTAGACTTGGGGATGAAAGCATACTCTGACAAGGGTGGAATACATATCTGTTTTCCTGTCCATCAAGAATTTTTTGCTGTGTTTCATGAAAGGAATCATCATATGGGAGATGCATTTGATGGGAAAAATGAAGGCCCCTTTTCAAAACCAATTAAACGAGACGAATTCTTATTAAATGAGCTATCCTGTTCTGAAGTATTGATACTTCTCCATGAATATGGTGCCATTGTGCTGGGAGACAAGGTTGTTGAAGAAAGAAAAGCAGCCAAATCTCCTCTGAAAGTGATGACTGAAGCAATAACGTCTTTGATTGAGCATAAGGGCCTACCAGTACAGCTTCTAGAGGAACTGCCAAGAAGATGGGATCTGCTTGGAGATATTGTTTTACTTCCAAGTACTTCTTTTAAAGATTCCATGTGGGACTCCATTGCAGAAGAGCTTTGGTCCATTGTTGCCAAATCACTCAAGGCTCACCGTCTAGCTCGCCAAGGCCCAGTTGCTGCAACTGGTACAAGAGATAGCACATTGCAGATTCTTGTTGGAAATAATGGCTGGTTCAATCATCAAGAAAATGGAATACTCTATTCTTTTGATGCTACAAAATGCATGTTCTCATGGGGAGAGGGTGGAATATTACATGTTCATGGGAATACAAAAGACTCAGACGAGAGTCAGTGGACTGATCATGTATCAAAATCAATACATGACATTGCTAGATCTGAAGGTTATTGTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATGCTCCACATATTCGCCACGTTGGTAGCAGATGTAAGATGCAGACAGATCCCAAGATAGTGAACGGTTTGGTATTTGAGATTGAAAACTGGTTAATGCATACAATCAATGTCAGTATCATTAAGAATATTAATATGCCATAA
Predicted protein sequences of Glyma17g01710
>Glyma17g01710.2   sequence type=predicted peptide   gene model=Glyma17g01710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSNIYVFGGLDNDIIFSSFRVFDTNNLHWKEIPVSGDWPCARHSHAMVASGCQIFMFGGYNGGKALGNLYSFDVQKGQWMKERTDGWNPHARFSHSIFVYKNYLGVLGGCPVRQHCQELALLDLKLHLWKHVTLNSVGKDSFVCSTANVMGDDVVVVGSGASCYAFGTKFSEPAKLSLLHLMHSHDEPVKNQRKHIINQNEGTNRNNIENSFGPQLEHAPNLSEDESSHFNGNIPCLNDQSQMIVLHYVLQLEKKYAKLGKDILKKFGWLDLGMKAYSDKGGIHICFPVHQEFFAVFHERNHHMGDAFDGKNEGPFSKPIKRDEFLLNELSCSEVLILLHEYGAIVLGDKVVEERKAAKSPLKVMTEAITSLIEHKGLPVQLLEELPRRWDLLGDIVLLPSTSFKDSMWDSIAEELWSIVAKSLKAHRLARQGPVAATGTRDSTLQILVGNNGWFNHQENGILYSFDATKCMFSWGEGGILHVHGNTKDSDESQWTDHVSKSIHDIARSEGYCWEVSIEHVERVKWYAPHIRHVGSRCKMQTDPKIVNGLVFEIENWLMHTINVSIIKNINMP*






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