Glyma17g01660 - SoyBase

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Report for Sequence Feature Glyma17g01660

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1009217
stop:	1015636
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g01660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05170	AT	Annotation by Michelle Graham. TAIR10: Galactosyltransferase family protein \| chr1:1491460-1493931 REVERSE LENGTH=404	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008378	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG2288	KOG	Galactosyltransferases	JGI		ISS
PTHR11214	Panther	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	JGI		ISS
PTHR11214:SF5	Panther	gb def: b0024.3.p [caenorhabditis elegans]	JGI		ISS
PF01762	PFAM	Galactosyltransferase	JGI		ISS
UniRef100_D7KEC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Galactosyltransferase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KEC0_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EF3C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF3C related cluster n=1 Tax=unknown RepID=UPI000233EF3C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g01660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01660

Paralog	Evidence	Comments
Glyma07g39070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g013200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g01660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g01660

Limit To All Plant Sequences

>Glyma17g01660.1   sequence type=CDS   gene model=Glyma17g01660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGCAAGGGAGGTGTAGAACTGAGTGGAAGGAATGTCTTACATAGGAAATGGGCTCTTCTGCTTTGTGTGGCAAGCTTCTGTGCTGGAATGTTCTTCACCAATAGGATATGGTCAATGGCTGAATATAAAGAAATTTCAAGGGCTTCTACTGAGATTGAAAGAATAAAATTAAACTCTGAGGGTTGTAATCTAAATCTAGTTGTAAGGCCTAACTCCAATTACAGTCAAGTGGAAGTTTCAAATACACAGAACGTTATCACGAAATCGAGGAAGTCAGAGACAGTTGAATCAACTACAAGGAAAAAATATTTCATGGTTATAGGGATCAATACAGCTTTTAGTAGCAGGAAGCGCAGAGATTCTGTTCGTGCAACTTGGATGCCACGAGCTGAGGAAAGAAAGAAGTTGGAGGAAGAAAAGGGCATAATCATACGATTTGTTATAGGTCACAGTTCTACATCTGGTGGCATTCTTGACAAAGCTATTGAAGCAGAGGAGAGGCTTCATGCTGACTTTTTGAGGCTGAACCACATTGAGGGATACCTAGAACTATCAGCTAAGACAAAGATCTACTTTTCAACTGCTGTTGCCTTGTGGGATGCTGAATTTTATGTCAAAGTTGATGATGATGTTCATGTGAATTTAGCAACACTTGGATTGACTCTGTCTATGCATCGTAAGAAACCTCGGGTGTATATTGGGTGCATGAAATCTGGTCCTGTCCTTGCTCAAAAGGGAGTGAGATACCATGAACCCGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTTCGGCATGCTACAGGACAATTATATGCCATTTCACAAGATTTGGCTACTTATATATCAATAAATCAGGGTATGCTGCATAAATATGCTAATGAAGATGTCTCATTGGGATCTTGGTTTATTGGTTTAGATGTGGATCATGTTGATGATAGGAGAATGTGTTGTGGCACACCCCCTGATTGCGAGTGGAAAGCACAGGCCGGTAACATCTGCGTTGCTTCGTTTGATTGGAAATGCAGTGGGATCTGCAGATCTGTTGAGAGGATGAAAGAAGTTCACCAGCGTTGTGGGGAGGATGAAAACGCATTGTGGAGTGGAACCTTCTAA

Predicted protein sequences of Glyma17g01660

Limit To All Plant Sequences

>Glyma17g01660.1   sequence type=predicted peptide   gene model=Glyma17g01660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSKGGVELSGRNVLHRKWALLLCVASFCAGMFFTNRIWSMAEYKEISRASTEIERIKLNSEGCNLNLVVRPNSNYSQVEVSNTQNVITKSRKSETVESTTRKKYFMVIGINTAFSSRKRRDSVRATWMPRAEERKKLEEEKGIIIRFVIGHSSTSGGILDKAIEAEERLHADFLRLNHIEGYLELSAKTKIYFSTAVALWDAEFYVKVDDDVHVNLATLGLTLSMHRKKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEVGNKYFRHATGQLYAISQDLATYISINQGMLHKYANEDVSLGSWFIGLDVDHVDDRRMCCGTPPDCEWKAQAGNICVASFDWKCSGICRSVERMKEVHQRCGEDENALWSGTF*

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