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Report for Sequence Feature Glyma17g01601

Feature Type:gene_model
Chromosome:Gm17
Start:972034
stop:975293
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g01601
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11820AT Annotation by Michelle Graham. TAIR10: O-Glycosyl hydrolases family 17 protein | chr1:3991144-3993327 REVERSE LENGTH=511 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
PTHR16631Panther GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED JGI ISS
PTHR16631:SF1Panther GLUCAN 1,3-BETA-GLUCOSIDASE JGI ISS
PF00332PFAM Glycosyl hydrolases family 17 JGI ISS
PF07983PFAM X8 domain JGI ISS
UniRef100_G7JJ89UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7JJ89_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KNE6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNE6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g01601
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g01601 not represented in the dataset
Glyma17g01601 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01601
ParalogEvidenceComments
Glyma07g39140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01601 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g012500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g01601
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g01601
>Glyma17g01601.2   sequence type=transcript   gene model=Glyma17g01601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGTACCAAAAAGAAATAGGAGGCAAAGCACTGTCTTCCACCAAAGAACTGTCGAATTACAGTTTTACCCCAGCCACGTTGTCCGACAATTTTCTTCATTTTGCGCAAATGTCTTTAAGTCTAAACTCTGAGAAGACAAAGAAAGCCAAAGCCCCTTTTCCCAAATTAAGTCCGTGAGATCACTTAGATGTCTCTATTCCTAATCCAAATTTAATAATTAAAACATATTATAGCTTTGTGTGAAGGAGTAAATGAAAATATGTTGCAGTTGGCACATGTCATCTCCTCTACTCGAGCTGAAGCAGGGATGAGGAAGTTAAGTCTAGGCTCCTTTTCAATGGCAAACTCTAATCTCGTCATCATCCTCTACTTCTCCTTCTTCACCTTCGCTGAAGCAGAAGCACTACATTCCCAGCTTAAGCAGCAAATCCAAGACCAAGAGAAGCTTCCATTCGTGGGCGTCAACATCGGCACCGACGTCTCCAACCTTCCATCTGCCTCGGACCTTGTCGCGTTCCTTCAACTGCAGAAGATAACACACGTTCGCATCTACGATGCAAACTCAGACATCCTGAAAACTTTGTCGGGGACCAAGATTCGCGTCATCATCAGCGTCCCCAACAACCAGCTCCTGGCGATTGGTTCCTCCAACTCCACCGCGGCCTCCTGGATCGATCGTAATGTCGTCGCTTACTACCCCCAAACCCTCATCAGCGGAATCTCCGTCGGCGACGAGGTTCTGACCACCGTCCCCTCCTCCGCCCCGCTGATTCTCCCCGCCGTCGAGTCCCTCTACAACGCCCTCGTCGCCTCCAACCTCCACCAACATATCAAGGTCTCAACCCCTCACGCCGCTTCCATCATTCTTGACCCTTTCCCTCCCTCTCAGGCTTACTTCAACCAATCCCTCGTTTCCGTTATTCTCCCTCTCCTTCAGTTCCTTTCTCGAACCGGTTCCCCTCTCACGATGAACCTTTACCCCTACTACGTCTTCATGCAGAATAAAGGCGTGGTTCCTCTCGACAATGCTCTCTTCAAACCCCTCACTCCTAATAAGGAAATGGTCGACCCCAACACCTTGCTTCACTACACCAACGTCCTCGACGCTATGGTCGACGCCGCTTATTTCTCCATGAAGAACCTTAATATCACCGATGTTGCTGTTCTTGTCACTGAGACAGGTTGGCCTGCCAAGGGTGATTCTAAGGAGCCTTATGCTACCAAGGACAATGCTGATACTTACAATTCCAATTTGATTAGGCATGTTTTTGATCGCACCGGAACCCCTCTGCACCCTGAAACTACTTCCAGTGTGTTTATTTATGAACTGTTTAATGAGGACTTGAGGGCTCCGCCGGTTTCAGAGGCCAATTGGGGTTTGTTTTATGGGAACACTTCGCCGGCTTATTTGCTTCATGTGTCTGGGATTGGGACTTTTTTGGCGAATGATACCACTAATCAGACATACTGCATTGCCATGGATGGGTTTGATTCTAAGACGTTGCAGGCCGCGCTGGATTGGGCGTGTGGACCGGGGCGAGCCAATTGTTCCGAGATTCAGCCTGGAGAGACTTGTTTCCAGCCTAATAATGTGAAGAACCATGCTTCTTATGCGTTTGATAGCTATTACCAGAAAGAAGGCAAGGCTCAGGGGACTTGTGACTTCAAAGGACTGGCTATGATCACCACCACTGATCCCAGTCACGGGAGCTGTATATTTCCTGGAAGCCTACCTTAGTTTAATTGATTCCACATTCGATGTAATGCAGCAAGAAAGTGAGCAACAAGACAAAGGAAGTGGTCAACTCTACTATCTCAAGCAGTGCAGGAGAGAAGTTGAGGTTTAAAACCTTTAACAGCATAAAAATAAGTGCAATTGGCAACATTTTGCACATTTTATTGGTTGCATATCTCCCTACTTTGTTGGTAGTCCTATTATGAGGTGCAAATAATTCAATTTTTTGTTCTTTTTGGATTTTGAATTTCATAGAGTTTAAGGATGAGGTCATAAGAGAAAAGGAATCGCGCATGATCTGTAGGTCTAAACTTAGGGCTTATGTAGATGCTTCCTTTTTTAAGAAAGCAGTGTTAATAATTTTTGTTGGGGCTCTTGTAATTAACGTATGTATTTCTTAAAATTGTATTTGTTGGTTAATATGTTTAGAATGTGTATCAACATGTCACCATTATCTCTGTATTGGAGGCCCATGATTTTGGTCATTTTTCGTGGTAAAATTTATTTTCCATTACCTTTCTATTTTCTCTGTATATTTATGTTGGGAGTGAGAGAAACATAACCAACAAACCAAATGCCAA
Coding sequences of Glyma17g01601
>Glyma17g01601.1   sequence type=CDS   gene model=Glyma17g01601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAGTTGGCACATGTCATCTCCTCTACTCGAGCTGAAGCAGGGATGAGGAAGTTAAGTCTAGGCTCCTTTTCAATGGCAAACTCTAATCTCGTCATCATCCTCTACTTCTCCTTCTTCACCTTCGCTGAAGCAGAAGCACTACATTCCCAGCTTAAGCAGCAAATCCAAGACCAAGAGAAGCTTCCATTCGTGGGCGTCAACATCGGCACCGACGTCTCCAACCTTCCATCTGCCTCGGACCTTGTCGCGTTCCTTCAACTGCAGAAGATAACACACGTTCGCATCTACGATGCAAACTCAGACATCCTGAAAACTTTGTCGGGGACCAAGATTCGCGTCATCATCAGCGTCCCCAACAACCAGCTCCTGGCGATTGGTTCCTCCAACTCCACCGCGGCCTCCTGGATCGATCGTAATGTCGTCGCTTACTACCCCCAAACCCTCATCAGCGGAATCTCCGTCGGCGACGAGGTTCTGACCACCGTCCCCTCCTCCGCCCCGCTGATTCTCCCCGCCGTCGAGTCCCTCTACAACGCCCTCGTCGCCTCCAACCTCCACCAACATATCAAGGTCTCAACCCCTCACGCCGCTTCCATCATTCTTGACCCTTTCCCTCCCTCTCAGGCTTACTTCAACCAATCCCTCGTTTCCGTTATTCTCCCTCTCCTTCAGTTCCTTTCTCGAACCGGTTCCCCTCTCACGATGAACCTTTACCCCTACTACGTCTTCATGCAGAATAAAGGCGTGGTTCCTCTCGACAATGCTCTCTTCAAACCCCTCACTCCTAATAAGGAAATGGTCGACCCCAACACCTTGCTTCACTACACCAACGTCCTCGACGCTATGGTCGACGCCGCTTATTTCTCCATGAAGAACCTTAATATCACCGATGTTGCTGTTCTTGTCACTGAGACAGGTTGGCCTGCCAAGGGTGATTCTAAGGAGCCTTATGCTACCAAGGACAATGCTGATACTTACAATTCCAATTTGATTAGGCATGTTTTTGATCGCACCGGAACCCCTCTGCACCCTGAAACTACTTCCAGTGTGTTTATTTATGAACTGTTTAATGAGGACTTGAGGGCTCCGCCGGTTTCAGAGGCCAATTGGGGTTTGTTTTATGGGAACACTTCGCCGGCTTATTTGCTTCATGTGTCTGGGATTGGGACTTTTTTGGCGAATGATACCACTAATCAGACATACTGCATTGCCATGGATGGGTTTGATTCTAAGACGTTGCAGGCCGCGCTGGATTGGGCGTGTGGACCGGGGCGAGCCAATTGTTCCGAGATTCAGCCTGGAGAGACTTGTTTCCAGCCTAATAATGTGAAGAACCATGCTTCTTATGCGTTTGATAGCTATTACCAGAAAGAAGGCAAGGCTCAGGGGACTTGTGACTTCAAAGGACTGGCTATGATCACCACCACTGATCCCAGTCACGGGAGCTGTATATTTCCTGGAAGCAAGAAAGTGAGCAACAAGACAAAGGAAGTGGTCAACTCTACTATCTCAAGCAGTGCAGGAGAGAAGTTGAGGTTTAAAACCTTTAACAGCATAAAAATAAGTGCAATTGGCAACATTTTGCACATTTTATTGGTTGCATATCTCCCTACTTTGTTGGTAGTCCTATTATGA

>Glyma17g01601.2   sequence type=CDS   gene model=Glyma17g01601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAGTTGGCACATGTCATCTCCTCTACTCGAGCTGAAGCAGGGATGAGGAAGTTAAGTCTAGGCTCCTTTTCAATGGCAAACTCTAATCTCGTCATCATCCTCTACTTCTCCTTCTTCACCTTCGCTGAAGCAGAAGCACTACATTCCCAGCTTAAGCAGCAAATCCAAGACCAAGAGAAGCTTCCATTCGTGGGCGTCAACATCGGCACCGACGTCTCCAACCTTCCATCTGCCTCGGACCTTGTCGCGTTCCTTCAACTGCAGAAGATAACACACGTTCGCATCTACGATGCAAACTCAGACATCCTGAAAACTTTGTCGGGGACCAAGATTCGCGTCATCATCAGCGTCCCCAACAACCAGCTCCTGGCGATTGGTTCCTCCAACTCCACCGCGGCCTCCTGGATCGATCGTAATGTCGTCGCTTACTACCCCCAAACCCTCATCAGCGGAATCTCCGTCGGCGACGAGGTTCTGACCACCGTCCCCTCCTCCGCCCCGCTGATTCTCCCCGCCGTCGAGTCCCTCTACAACGCCCTCGTCGCCTCCAACCTCCACCAACATATCAAGGTCTCAACCCCTCACGCCGCTTCCATCATTCTTGACCCTTTCCCTCCCTCTCAGGCTTACTTCAACCAATCCCTCGTTTCCGTTATTCTCCCTCTCCTTCAGTTCCTTTCTCGAACCGGTTCCCCTCTCACGATGAACCTTTACCCCTACTACGTCTTCATGCAGAATAAAGGCGTGGTTCCTCTCGACAATGCTCTCTTCAAACCCCTCACTCCTAATAAGGAAATGGTCGACCCCAACACCTTGCTTCACTACACCAACGTCCTCGACGCTATGGTCGACGCCGCTTATTTCTCCATGAAGAACCTTAATATCACCGATGTTGCTGTTCTTGTCACTGAGACAGGTTGGCCTGCCAAGGGTGATTCTAAGGAGCCTTATGCTACCAAGGACAATGCTGATACTTACAATTCCAATTTGATTAGGCATGTTTTTGATCGCACCGGAACCCCTCTGCACCCTGAAACTACTTCCAGTGTGTTTATTTATGAACTGTTTAATGAGGACTTGAGGGCTCCGCCGGTTTCAGAGGCCAATTGGGGTTTGTTTTATGGGAACACTTCGCCGGCTTATTTGCTTCATGTGTCTGGGATTGGGACTTTTTTGGCGAATGATACCACTAATCAGACATACTGCATTGCCATGGATGGGTTTGATTCTAAGACGTTGCAGGCCGCGCTGGATTGGGCGTGTGGACCGGGGCGAGCCAATTGTTCCGAGATTCAGCCTGGAGAGACTTGTTTCCAGCCTAATAATGTGAAGAACCATGCTTCTTATGCGTTTGATAGCTATTACCAGAAAGAAGGCAAGGCTCAGGGGACTTGTGACTTCAAAGGACTGGCTATGATCACCACCACTGATCCCAGTCACGGGAGCTGTATATTTCCTGGAAGCCTACCTTAG
Predicted protein sequences of Glyma17g01601
>Glyma17g01601.1   sequence type=predicted peptide   gene model=Glyma17g01601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQLAHVISSTRAEAGMRKLSLGSFSMANSNLVIILYFSFFTFAEAEALHSQLKQQIQDQEKLPFVGVNIGTDVSNLPSASDLVAFLQLQKITHVRIYDANSDILKTLSGTKIRVIISVPNNQLLAIGSSNSTAASWIDRNVVAYYPQTLISGISVGDEVLTTVPSSAPLILPAVESLYNALVASNLHQHIKVSTPHAASIILDPFPPSQAYFNQSLVSVILPLLQFLSRTGSPLTMNLYPYYVFMQNKGVVPLDNALFKPLTPNKEMVDPNTLLHYTNVLDAMVDAAYFSMKNLNITDVAVLVTETGWPAKGDSKEPYATKDNADTYNSNLIRHVFDRTGTPLHPETTSSVFIYELFNEDLRAPPVSEANWGLFYGNTSPAYLLHVSGIGTFLANDTTNQTYCIAMDGFDSKTLQAALDWACGPGRANCSEIQPGETCFQPNNVKNHASYAFDSYYQKEGKAQGTCDFKGLAMITTTDPSHGSCIFPGSKKVSNKTKEVVNSTISSSAGEKLRFKTFNSIKISAIGNILHILLVAYLPTLLVVLL*

>Glyma17g01601.2   sequence type=predicted peptide   gene model=Glyma17g01601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQLAHVISSTRAEAGMRKLSLGSFSMANSNLVIILYFSFFTFAEAEALHSQLKQQIQDQEKLPFVGVNIGTDVSNLPSASDLVAFLQLQKITHVRIYDANSDILKTLSGTKIRVIISVPNNQLLAIGSSNSTAASWIDRNVVAYYPQTLISGISVGDEVLTTVPSSAPLILPAVESLYNALVASNLHQHIKVSTPHAASIILDPFPPSQAYFNQSLVSVILPLLQFLSRTGSPLTMNLYPYYVFMQNKGVVPLDNALFKPLTPNKEMVDPNTLLHYTNVLDAMVDAAYFSMKNLNITDVAVLVTETGWPAKGDSKEPYATKDNADTYNSNLIRHVFDRTGTPLHPETTSSVFIYELFNEDLRAPPVSEANWGLFYGNTSPAYLLHVSGIGTFLANDTTNQTYCIAMDGFDSKTLQAALDWACGPGRANCSEIQPGETCFQPNNVKNHASYAFDSYYQKEGKAQGTCDFKGLAMITTTDPSHGSCIFPGSLP*






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