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Report for Sequence Feature Glyma17g01580

Feature Type:gene_model
Chromosome:Gm17
Start:956567
stop:961506
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g01580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G22010AT Annotation by Michelle Graham. TAIR10: SKU5 similar 4 | chr4:11663429-11666463 FORWARD LENGTH=541 SoyBaseE_val: 0ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048653GO-bp Annotation by Michelle Graham. GO Biological Process: anther development SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF11Panther MULTICOPPER OXIDASE-RELATED JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_G7JJ92UniRef Annotation by Michelle Graham. Most informative UniRef hit: L-ascorbate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7JJ92_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MR46UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MR46_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g01580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01580
ParalogEvidenceComments
Glyma07g39160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g012300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g01580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g01580
>Glyma17g01580.1   sequence type=CDS   gene model=Glyma17g01580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACCATGCAAATGCAAATGCAATGTTCTCTCTGCTCTCATTCTTCTTGTCACATTCCTTTTTATTGCTTCTTCCGTCCACTGTGAAGACCCATATCGGTACCTCACTTGGAAGGTCACCTATGGTGACATCTATCCTCTTGGTGTCAAGCAACAAGGGATCTTAATTAATGGGCAGTTTCCAGGGCCTCAAATAGATGCTGTTACAAATGACAACTTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGGAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCACAAACTGTCCAATCCCACCTGGGAGGAACCTCACATATGCTATCCAGGTAAAAGACCAGATTGGTAGCTATTTCTACTTCCCATCTCTTGGAATGCACAAAGCTGCTGGAGCATTTGGTGGCATCAGAATTTGGAGCCGGCCTCAAATTCCTGTCCCTTTTCCTTCTCCTGCCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGAAGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGCCTTCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCAACTTCAGAATCCAGGGGCACAGTTTGAAACTTGTGGAGGTAGAAGGATCTCATACCCTCCAAAACACCTATTCTTCCCTTGATGTCCATCTCGGACAGTCCTATTCCGTGCTGGTCACAGCTGATCAACCTGTCAAGGATTACTATATGGTTGTCTCTACAAGATTTACCAGACGGATACTCACAACAACTTCCGTTCTTCATTATAGCTATTCAAAAACAGGGGTATCTGGTCCTGTTCCTCCAGGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCACTATGGATTGATCAAACCGAGTCGAACCATCATGCTTGCAAATTCTGCTCCTTATATCAATGGCAAGCAGAGGTATGCGGTCAACGGTGTCTCATACAATGAACCAGATACCCCATTGAAACTTGCCGACTACTTCAACATCCCTGGAGTTTTCTACGTTGGAAGCATTCCTACCTATCCTAACGGGGGCAACAATGCCTACCTCCAAACTTCTGTCATGGGGGCTAATTTCCATGAATTGGTGGAGATTGTATTCCAAAATTGGGAGGATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGGGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAGAGACACAGTTGCTAGATGCACCACTCAGGTGTATCCAAGGTCATGGACTGCAATCTACATGGCTCTTGACAACGTGGGAATGTGGAACATAAGGTCCGAGAATTGGGGAAGGCAGTACTTAGGACAACAATTGTATCTGAGGGTGTATACACCTTCCAAATCATGGAGGGATGAATATCCGGTGCCAAAGAATGCGCTTCTATGTGGCAGAGCAAGTGGTCGTCGCACAAGGCCTTTCTAA
Predicted protein sequences of Glyma17g01580
>Glyma17g01580.1   sequence type=predicted peptide   gene model=Glyma17g01580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPCKCKCNVLSALILLVTFLFIASSVHCEDPYRYLTWKVTYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIINVYNYLREPFLISWNGLQHRRNSWQDGVYGTNCPIPPGRNLTYAIQVKDQIGSYFYFPSLGMHKAAGAFGGIRIWSRPQIPVPFPSPAGDITILAGDWFKLDHRRLRRLLENGHNLPFPDGLLINGRGWNGNTFTVDQGKTYRFRISNVGLTTSINFRIQGHSLKLVEVEGSHTLQNTYSSLDVHLGQSYSVLVTADQPVKDYYMVVSTRFTRRILTTTSVLHYSYSKTGVSGPVPPGPTLDIASSVYQARTIRWNLTASGPRPNPQGSYHYGLIKPSRTIMLANSAPYINGKQRYAVNGVSYNEPDTPLKLADYFNIPGVFYVGSIPTYPNGGNNAYLQTSVMGANFHELVEIVFQNWEDSVQSWHIDGYSFFVVGYGSGQWTADSRVQYNLRDTVARCTTQVYPRSWTAIYMALDNVGMWNIRSENWGRQYLGQQLYLRVYTPSKSWRDEYPVPKNALLCGRASGRRTRPF*






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