SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G28200 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | chr | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2396 | KOG | HAT (Half-A-TPR) repeat-containing protein | JGI | ISS | |
| PTHR23271 | Panther | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 | JGI | ISS | |
| PTHR23271:SF1 | Panther | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 | JGI | ISS | |
| PF08640 | PFAM | U3 small nucleolar RNA-associated protein 6 | JGI | ISS | |
| UniRef100_G7JJ94 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U3 small nucleolar RNA-associated protein-like protein n=1 Tax=Medicago truncatula RepID=G7JJ94_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MR45 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MR45_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g01570 not represented in the dataset |
Glyma17g01570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g39170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g012200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g01570.1 sequence type=CDS gene model=Glyma17g01570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGACGTGGTGCAGTACCGGTTGGAGCGCATGGTGGATGAGCTCGACGACCTCGAGCAGCGTGGTCTCTTCAGCCGGCGCGAGATTGCGGAGATCGTAAAGCAGCGCCGAAAGTTCGAGTACCGGCTGAAGCGTCCGAGTCCTCTGAAGCAAGACTTCTTGGCCTACGTGGAGTACGAGACTCAGCTCGACGCCCTCCGCAGGCTTCGCAAGAAGTCCGTGGCGCGCGAATTGATGAAGCAAGGCAACAAGAAGCTCAAGAAGTCCAAGTCCGATTTCGCTGGATTGCTCAGGATTATGGACATTTACGAGCTAGCTTTGAAGCGCTACAAAGGCGATATCGATCTCTGGTTTTGCTACCTCGAGTTTTGCAGGCTCAGAAAGAATGGCAGGATGAAGAAGGCCTTGGCGAATGTTATTAGGTTTCATCCAAAGGTTCCGGGAGTTTGGATTTATGCTGCGGCTTGGGAATTTGATCATAACTTGAATGTTGCGGCTGCTCGTGCTTTGATGCAGGAAGGTCTCAGAGTTTGTCCAACTTCCGAAGACCTTTGGGTCGAGTATCTTCGGATGGAACTTACTTACCTTAATAAGTTGAAGGCACGCAAGGTTGCTTTAGGTGAGGATCAAGGAACTCTCACCCGTGATCCTAGGAGTTCTGATGAAAAACATTGGAGGGATGAAAACAGTGAGTTGTTTATGCCTCTTGGCAAAAGAGGGGATGATGATGGTGGAGCAAATGTTGGAAGTGATGAATCAGAAAAGAAGCAGGAACTGTTTGAAGAACATGGTATGAATATTTTTCAAACTGTCTATAGTGGAGCAGTTGAAGCTGTCCCCTCAAGTCTCAGTCTTAGGAAGCGGTTATTTGAAATATTGGAGGGTACAAACTTGTCACATTATGAAGATATGTGCAAGGAGATATTGAATGACATGAAGAGGGATTTTTCTACACAACCGGAATTTTGGGACTGGCTCGCAAGGCATGAATGTGATCTGGAGATAAGTGAGGAGGGCATAATTCCTCAGGTGGAAAAGGCAGTTCAGGTTTATGAGGAGGCTTTGAAAAATGTGCCATCAGGAACTATGTTTAGTTTGTATGCAAATTTTCTAACAGATATTATAGCTCCTAAGGAAGGAGAAACTGATATAAATGGGTCATCAGGTTGTGCTGTAAACTATATATCACATCTCCTGTCAATATACGAAAGGGCTGAAAGCATGGGGTGCATTACTGAAGATCTTGCATGCAAGCATGTGTCCTTACATTTGCAATTGAGACAGCTGGATGAGGCCCAAAAACTGGCAGCAAAGCTTTGCAGTGGAAAGCTTGCAGAATCGGTAGAGTTATGGGGATTAAGGATTACCATAGAAATTAGATGCATCACAGGAAGTTCTTCTTCACCAAGTGATGCTGATTTGCAATCCCTTTTTGAGCTCCTTCAACAAATTTTGATGAAAGTGTCTGTTTCAAGATCAGAGAACTTGTGGCTAAAGGCTCTTAAATTCTATGCAAATCAAAGACGATATTTTGATAAATTGGTGGAGATTTCTGTTGTTACCTTGGTCAGAGATGGTGGTAGTGAAAATGGATTTTCCCTTTCTTCTGCTATTGTAAGTTTTATACTTCAAAAGGATGGAATTCAGAAGACCAGAGATATCTATAAACGATTTCTAGCTTTACCGCTTCCTGGTCTTGCTTTATATAGACGTTGCATTGACCTGGAAACAAACCTTGCATCAATAGGAGATAAAGATGGTCTTATAAATGCCAGGAAATTATATGAATCTTCACTTGCAACATATGACCAAAATGTCAGCTTGTGGCAAGATTACTATCGCCTAGAGATCAAGATGGGAACATCAGAAAAGGCTACTGCTATCTATTGGCGTGCAAGGAAAGTACTCAAAGATGCTAGTGAATTTGTCACTGCCCCAGATATGTGA
>Glyma17g01570.1 sequence type=predicted peptide gene model=Glyma17g01570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADVVQYRLERMVDELDDLEQRGLFSRREIAEIVKQRRKFEYRLKRPSPLKQDFLAYVEYETQLDALRRLRKKSVARELMKQGNKKLKKSKSDFAGLLRIMDIYELALKRYKGDIDLWFCYLEFCRLRKNGRMKKALANVIRFHPKVPGVWIYAAAWEFDHNLNVAAARALMQEGLRVCPTSEDLWVEYLRMELTYLNKLKARKVALGEDQGTLTRDPRSSDEKHWRDENSELFMPLGKRGDDDGGANVGSDESEKKQELFEEHGMNIFQTVYSGAVEAVPSSLSLRKRLFEILEGTNLSHYEDMCKEILNDMKRDFSTQPEFWDWLARHECDLEISEEGIIPQVEKAVQVYEEALKNVPSGTMFSLYANFLTDIIAPKEGETDINGSSGCAVNYISHLLSIYERAESMGCITEDLACKHVSLHLQLRQLDEAQKLAAKLCSGKLAESVELWGLRITIEIRCITGSSSSPSDADLQSLFELLQQILMKVSVSRSENLWLKALKFYANQRRYFDKLVEISVVTLVRDGGSENGFSLSSAIVSFILQKDGIQKTRDIYKRFLALPLPGLALYRRCIDLETNLASIGDKDGLINARKLYESSLATYDQNVSLWQDYYRLEIKMGTSEKATAIYWRARKVLKDASEFVTAPDM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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