Glyma17g01510 - SoyBase

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Report for Sequence Feature Glyma17g01510

Feature Type:	gene_model
Chromosome:	Gm17
Start:	924099
stop:	925909
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g01510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62280	AT	Annotation by Michelle Graham. TAIR10: SLAC1 homologue 1 \| chr1:23007309-23008540 REVERSE LENGTH=385	SoyBase	E_val: 1.00E-126	ISS
GO:0006873	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular ion homeostasis	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
PF03595	PFAM	C4-dicarboxylate transporter/malic acid transport protein	JGI		ISS
UniRef100_D7KUS7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C4-dicarboxylate transporter/malic acid transport family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KUS7_ARALL	SoyBase	E_val: 8.00E-127	ISS
UniRef100_I1MR38	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MR38_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g01510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01510

Paralog	Evidence	Comments
Glyma07g39230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g011600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g01510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g01510

Limit To All Plant Sequences

>Glyma17g01510.1   sequence type=CDS   gene model=Glyma17g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGTGACACTGAGATCAAGCCATCAGTTGAAGTAGTCGTATGTGCTTCCATGAACAATAATAATAGCGCAAACAACCACACCCTCCCAACCGACATCACCAAGCCATCACAATTACCAATCTTGACCAGGCTCCATGCTGGTTACTTTTTCATATGCCTTTCCTTTGGAGCACAAGCTTTGCTCTGGAAGAGTTTGAGTAAACACAACAAGGACTCACAAAGTCTCTGGCATGGATTCAACTTGATGCCTTCCATTGCATTTCTACTTCTTTGGTGTGTGTCACTGCTGACTGCCACTAGTTTGTCTTTACTTTACGTGCTCAAGTGCATCTTTCACTTGGAAATGGTGAAGGAGGAATTCTCACATCATGTTGGAGTGAACTGCATGTATGCTCCTTGGATTTCTTGGCTTCTCATGCTTCAATCAGCACCCACCATCCTTCATTCAACTTCTTGCTACCAAGTTCTTTGCTTGGCCTTTTCGTTTGTAATATTGCTGCTTGACATAAAACTATATGGACAATGGTTCACAACTAAAAAGAGGTTCCTGTCAGTTGTGGCAAACCCTACTAGCCAGGTGTCGGTTATAGGGAACTTGGTGTCTGCTCAAGTTGTTGCAGAAATTGGTTGGAAAGAGAGTGCAGTTTTAATGTTCTCACTCGGATTGGTATATTATCTAATTATATTTGTAACGCTGTATCAGCGTCTGACAAGTGGCAGCCAGTTCCCCACAGTGCTAAGGCCAACTTACTTGTTGTTTTTTGCTGCACCAAGCATAGCAAGTCTAGCCTGGAAATCCATCACAGGTGCTTTTGTCACCCCATCAAAGATGCTCCTCTTTCTGTCTTTATTCCTGTTTATGTCTCAGGCTTGCAGGCCAGCCATGTTCAAGAAATCCATGAAGAGGTTAAACGTTACATGGTGGGCGTATTCATTCCCTTTAACCTTCCTTGGACTAGCTTGTGCTGAATATGCTCAAGAGGTGGAAAGTGGCATGGCCTCTTGGTTAATGCTGGTTATATGTATGGTCTCCGTGCTGGTTTTTATTGCTTTGATGATCATCACTGTACTCAAAATTGAGAGGCTGTTCCATAAAAATGCTCCGATTATGACTTGA

Predicted protein sequences of Glyma17g01510

Limit To All Plant Sequences

>Glyma17g01510.1   sequence type=predicted peptide   gene model=Glyma17g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGDTEIKPSVEVVVCASMNNNNSANNHTLPTDITKPSQLPILTRLHAGYFFICLSFGAQALLWKSLSKHNKDSQSLWHGFNLMPSIAFLLLWCVSLLTATSLSLLYVLKCIFHLEMVKEEFSHHVGVNCMYAPWISWLLMLQSAPTILHSTSCYQVLCLAFSFVILLLDIKLYGQWFTTKKRFLSVVANPTSQVSVIGNLVSAQVVAEIGWKESAVLMFSLGLVYYLIIFVTLYQRLTSGSQFPTVLRPTYLLFFAAPSIASLAWKSITGAFVTPSKMLLFLSLFLFMSQACRPAMFKKSMKRLNVTWWAYSFPLTFLGLACAEYAQEVESGMASWLMLVICMVSVLVFIALMIITVLKIERLFHKNAPIMT*

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