SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04350 | AT | Annotation by Michelle Graham. TAIR10: tRNA synthetase class I (I, L, M and V) family protein | chr4:2128129-2133030 FORWARD LENGTH=973 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006429 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leucyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004823 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: leucine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0435 | KOG | Leucyl-tRNA synthetase | JGI | ISS | |
| PTHR11946 | Panther | ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES | JGI | ISS | |
| PTHR11946:SF36 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00133 | PFAM | tRNA synthetases class I (I, L, M and V) | JGI | ISS | |
| PF08264 | PFAM | Anticodon-binding domain | JGI | ISS | |
| PF09334 | PFAM | tRNA synthetases class I (M) | JGI | ISS | |
| UniRef100_G7KK32 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leucyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7KK32_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MR31 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MR31_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g01430 not represented in the dataset |
Glyma17g01430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g39300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g010800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g01430.2 sequence type=CDS gene model=Glyma17g01430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTACACACTCACCTTCTCTTCCCTTCACCACACTCCCATGCATCACCATTTCTATTCCCATCTAGAACCAATGCCCTTCGCTCTCGAACATTCCCCGCCACTTCCATAAGAGGAGATTCTTCTTCTCTCAGGTTCCGCAGCCATGGCTGCAGAATCCGAAACTCGGCGGAGAATGACGTCGTCAGCGAAACGGAGCATAGTAAGCTACCGGTCACTAGGGCGTATCCTTTCCACGAAATCGAGCCCAATGGAGCTGGGCTTCACGTTGGCCATCCACTGGGATATACTGCCACAGACATTCTTGCTAGATACAAACGCATGCAGGGATATAATGTGTTGCATCCGATGAGGTGGGATGCTTTTGGATTGCCAGCAGAACAATATGCTATTGAGACAGGAACTCACCCAAAGCTCAATACGGTGAGGAACATCAATCGCTTTCGCACTCAGGCCGAAGTTCCAGTTAATTGGTGCCCTGCACTTGGCACTGTGTTGGCCATTGAGGAGGTGATTGATGGTGTCAGTGAATGGGGCGGCCATCCTGTAATAAGAAAGCCAGTGAGGCAATGGATGCTTAAGATTATTGCATATGCTGACTGTCTTCTTGAGGACTTAGATGACCTTGACTGGCCCGAAAGTGTAAAAGAAATGCAGAGAAATTGGATAGGGAGGTCAGAAGGGGCAGAGATGGAATTTTGCATTCTTGATAGTGATGTAAAGGAGAGAGACAAAAAAATTATTGTGTATACTGCAAGACCTGATACGATCTTTGGTGCAACCTACCTAGTCATGGCACCAGAGCATCCCTTGTTGTCATCATTGGTTTCCATTGCCCAGAGCAAACATAGTGTCAAGTCTGGAAAGGCTTTTTCAGGCATTATTGTAAATTCATCAAATACACTGGCGGGGCTTGACATTAATAGCTTGTCTAGCAAAGAAGCTGCTCTAAAAGTCATTGAGTGGGCAGGGAAAAGTGGAAATGGAAAGAGGAAGGTGAACTACAAGTTAAGGGACTGGCTTTTTGCTCGGCAACGTTACTGGGGTGAACCTATCCCTGTCATCTTCATGGATGATAATGGTGAGACTGTCCCACTGTGTGACACTGAACTGCCCCTTACTCTACCTGAATTGAATGATTTTTGTCCCTCTGGAACAGGGGAGCCTCCTCTGTCTAAGGCAGTGTCTTGGGTGAAGGCCACAGATAGCTTATCTGGAAGACCAGCTACTCGTGAAACAAATACCATGCCACAGTGGGCTGGTTCATGCTGGTACTATTTGAGATTTATGGACCCACATAATTCCAAGGAATTGGTTGATAAGACAAAAGAAAGGTATTGGAGCCCTGTTGATGTGTATGTTGGGGGTGCTGAGCATGCAGTTCTCCATTTACTGTATGCTAGGTTCTGGCACAAGGTTCTCTATGACATTGGTGTTGTATCCACCAAGGAGCCCTTCCAATATGTCATAAACCAGGGGATTATTCTTGGAGAGGTTCAATATATGGCTTGTAGAGATCAAGATGGAAATCTGATATCTGCTGATTCAACTGGCATGTTGAATGATCATAAACTAGAAATAATTCCTGTGGAAAAGGTCATGAAATCTGGGGATTCTTTTGTCCTGAAAGAACATCCTGACATACGTTTAATTGCCCGTGCCCACAAAATGAGTACAAGTAGTGGAAATGTTGTTAATCCAGATGATGTTGTCTCTGAGTATGGTGCAGATTCTCTTCGATTATACAAAATGTTCATGGGACCATTGAGAGACTCGAAAAAAACTTGGAGGCTCATTGTTGGTTCACCTTTGTCTGATGGCACATTTAAGGATAGAACTGTATCAGTTGATGAGGAGCCTACTATAGAACAACTTCGTTGTCATCATAAATGCATTGCTAAGGTAACAGAGGAAATTGAGGGCACACGGTTCAACACTGGAATTTCTGCAATGATGGAGTTCCTTAATTGGGATAAACATCCAAGATCGGTTATTGAGGCATTTGCTTTGCTGCTTTCACCATATGCGCCACATATGGCTGAGGAGCTATGGTCTTGGCTAGGGCACACAAAATCATTAGCCTACGAGCCTTTCCCTAAGGCAAATCCTGCTTACCTGAAGGATTCCACAGTAGTCCTTCCAGTTCAGATTAATGGCAAGACAAGAGAAGAGGATGCTTTTGTACTAGCATCTAGGGATGAAAAACTATCCAAGTATTTGCATGGTCAATCTGTCAAAAAAAGAATTTATGTTCCTGGCAAGATTTTGAACATTGTTTTGGGCCGCAAAAACATTAAGGTTGGTGTACAGTAG
>Glyma17g01430.2 sequence type=predicted peptide gene model=Glyma17g01430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLHTHLLFPSPHSHASPFLFPSRTNALRSRTFPATSIRGDSSSLRFRSHGCRIRNSAENDVVSETEHSKLPVTRAYPFHEIEPNGAGLHVGHPLGYTATDILARYKRMQGYNVLHPMRWDAFGLPAEQYAIETGTHPKLNTVRNINRFRTQAEVPVNWCPALGTVLAIEEVIDGVSEWGGHPVIRKPVRQWMLKIIAYADCLLEDLDDLDWPESVKEMQRNWIGRSEGAEMEFCILDSDVKERDKKIIVYTARPDTIFGATYLVMAPEHPLLSSLVSIAQSKHSVKSGKAFSGIIVNSSNTLAGLDINSLSSKEAALKVIEWAGKSGNGKRKVNYKLRDWLFARQRYWGEPIPVIFMDDNGETVPLCDTELPLTLPELNDFCPSGTGEPPLSKAVSWVKATDSLSGRPATRETNTMPQWAGSCWYYLRFMDPHNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQYVINQGIILGEVQYMACRDQDGNLISADSTGMLNDHKLEIIPVEKVMKSGDSFVLKEHPDIRLIARAHKMSTSSGNVVNPDDVVSEYGADSLRLYKMFMGPLRDSKKTWRLIVGSPLSDGTFKDRTVSVDEEPTIEQLRCHHKCIAKVTEEIEGTRFNTGISAMMEFLNWDKHPRSVIEAFALLLSPYAPHMAEELWSWLGHTKSLAYEPFPKANPAYLKDSTVVLPVQINGKTREEDAFVLASRDEKLSKYLHGQSVKKRIYVPGKILNIVLGRKNIKVGVQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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