Glyma17g01391 - SoyBase

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Report for Sequence Feature Glyma17g01391

Feature Type:	gene_model
Chromosome:	Gm17
Start:	846239
stop:	850548
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g01391

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62330	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr1:23046965-23050053 FORWARD LENGTH=652	SoyBase	E_val: 0	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_G7KK44	UniRef	Annotation by Michelle Graham. Best UniRef hit: DUF246 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KK44_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7KK44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DUF246 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KK44_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g01391

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g01391 not represented in the dataset	Glyma17g01391 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01391

Paralog	Evidence	Comments
Glyma07g39331	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01391 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g010400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g01391

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g01391

Limit To All Plant Sequences

>Glyma17g01391.1   sequence type=CDS   gene model=Glyma17g01391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATCCGCTTCCGAACCAGATCGATGCTCGCCAACTTCGCGGACTCCGAGCCGCCTCTCCAGCTCCCGTAGATCCCAATCCCACTTTTCTTCGTGGTATCCAAGGAAACGAGCCAAACTGCTTCTCTCGCTTATTGCTTTTCTCGCTTTCGTTTTCTTTCACAATTGGTTTATGCTTCTCCGTTTACAACATCAACCCGATCCTATACCCAAACCTACACTTCGTTCCTCCTCCGTTTCACTTTCTCTTCAGCGGAAATGGAACAAGCCTTCAAATAAGAAAAAATCACAAAAGGGGAATTATGCAAGGATGTTGGCATTGGCTGCACATGCCTTGGCAGAGAATAAACGCGAACCTAAAGATTTGTGGCAAGAACCCTTCGTTCCTGCTTCTTCTTGGAGACCTTGTGCTGATCAGCGGAATTGGGAACCCAATGAGGGAAAAAATGGATACATTTTGGTTACTGCAAATGGTGGGATCAATCAACAACGAGTAGCTGTTTGTAATGCTGTCGTTGTGGCTCGTTTACTCAATTCAACTTTAGTTATCCCCAAATTTATGTACAGTAGTGTATGGAGAGATGTGAGTCAATTCAGCGATATCTATCAGGAGGAGCATTTTATTAACTACTTGACTCCTGATATTCGGATAGTGAGGGAGCTTCCAAAGGAGCTACAATCTTTGGACTTGGAGGCAATTAGTAGTGTTGTGACAGATGTTGACATGGAGAAGGAGGCCAAGCCAAGTTTTTACTTAAAACACATCTTACCTATTATAATTAAAAATCAAGTTGTTCACTTTGTTGGATTTGGTAATCGCCTGGCATTTGATCCAATAGCATTTGAACTGCAGAGACTTCGTTGCAGATGTAATTTTCATGCCCTGCAATTTGTTCCCAGAATACAAGAAACCGGTGCTTTGCTTCTTAAAAGATTGCGTGAACATTCAGGTCTTGTTGGACCATTGGATCGTTATCTTGTTGGTCCATTTGCCGAATCAATGAAGGAGAAAAGTGAAAGTAATGCCAAGAAAGCATCCAAGTATCTAGCTTTGCATCTCAGATTTGAAATTGACATGATAGCTCATTCTTTATGTGAATTTGCGGGAGGTGAAGAAGAGAGGAAAGAATTGGAAGCATATCGTGAAATCCATTTTCCTGCATTGTCACTGCTGAAGAGGACTACAAAATTACCTTCTCCTTCTGAGCTCAGGTCTGAAGGCCTATGTCCTTTGACACCTGAAGAATCCATCCTTATGCTTGGTGCTCTTGGTTTTAACCGCAAAACACACATATTTGTAGCTGGTTCTAATTTGTACGGAGGTGGCTCACGATTGGTTGCTTTGACCAATTTGTACCCTAAATTAGTCACCAAAGAGAACTTGCTTTCTTCAGCTGAACTCAAATCTTTTGCTAATTATTCCTCTCAGTTAGCAGCACTGGACTTCATAGGCTGCACTGCTTCAGATGCATTCGCCATGACTGATTCAGGAAGTCAGCTATCATCTTTGGTGTCTGGGTATCGAATTTATTATGGTGGTGGAAGAATGCCAACAATACGCCCAAATAAACGTAGACTTGCTAGTATATTTATGAAGAACTCTACCATAGAATGGCGTGTTTTTGAACAGAGAGTGAGGAAAGCAGTTAGGCAAACTAAACATGTACAGACAAGGCCGAAGGCAAGAAGTGTTTACAGGTATCCTAGGTGTAAAGAATGTATGTGCAGAACAGATTAA

Predicted protein sequences of Glyma17g01391

Limit To All Plant Sequences

>Glyma17g01391.1   sequence type=predicted peptide   gene model=Glyma17g01391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSASEPDRCSPTSRTPSRLSSSRRSQSHFSSWYPRKRAKLLLSLIAFLAFVFFHNWFMLLRLQHQPDPIPKPTLRSSSVSLSLQRKWNKPSNKKKSQKGNYARMLALAAHALAENKREPKDLWQEPFVPASSWRPCADQRNWEPNEGKNGYILVTANGGINQQRVAVCNAVVVARLLNSTLVIPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRIVRELPKELQSLDLEAISSVVTDVDMEKEAKPSFYLKHILPIIIKNQVVHFVGFGNRLAFDPIAFELQRLRCRCNFHALQFVPRIQETGALLLKRLREHSGLVGPLDRYLVGPFAESMKEKSESNAKKASKYLALHLRFEIDMIAHSLCEFAGGEEERKELEAYREIHFPALSLLKRTTKLPSPSELRSEGLCPLTPEESILMLGALGFNRKTHIFVAGSNLYGGGSRLVALTNLYPKLVTKENLLSSAELKSFANYSSQLAALDFIGCTASDAFAMTDSGSQLSSLVSGYRIYYGGGRMPTIRPNKRRLASIFMKNSTIEWRVFEQRVRKAVRQTKHVQTRPKARSVYRYPRCKECMCRTD*

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