Glyma17g01380 - SoyBase

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Report for Sequence Feature Glyma17g01380

Feature Type:	gene_model
Chromosome:	Gm17
Start:	841276
stop:	845694
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g01380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62340	AT	Annotation by Michelle Graham. TAIR10: PA-domain containing subtilase family protein \| chr1:23051123-23055656 REVERSE LENGTH=832	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0043086	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PTHR10795	Panther	SUBTILISIN/KEXIN-RELATED SERINE PROTEASE	JGI		ISS
PTHR10795:SF17	Panther	gb def: possible protease [sinorhizobium meliloti]	JGI		ISS
PF00082	PFAM	Subtilase family	JGI		ISS
UniRef100_G7JKE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine protease aprX n=1 Tax=Medicago truncatula RepID=G7JKE6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233905D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233905D related cluster n=1 Tax=unknown RepID=UPI000233905D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g01380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01380

Paralog	Evidence	Comments
Glyma07g39340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g010300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g01380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g01380

Limit To All Plant Sequences

>Glyma17g01380.2   sequence type=CDS   gene model=Glyma17g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTCTTGGTTGTTGCTATAACTTGCTCTCAAGAAGAGCAATCAATATACTTGGTCTTATTGGAAGGAGACGCGCTTGCTTTTCATGAAGGTTCGCGGGACCAAGATTCATCAACAATTCACCCCAACACCAACAGGTTAATATATATAGCTGCAAGACTAAGAAGTAGCCCAGGAGTTAAGTTGGTAGAGAAAGACAGAGGAGCGAAGATGACGACAACATACACACCTGAGTTTCTAAGTTTACGAAAAGGAATATGGGCGCAAGAAGGAGGAGACAGAAACGCAGGTGATGAAGTTGTCATTGGTTATGTGGACAGTGGCATCAACGCACTTCATCCCAGCTTTGCTTACGATCCCATGCACCCTTTCTCATCAAATCTCTCACATTTTGAGGGTGCCACCTGTGAGACGGGTCCTCTCTTCCCACCTAGTTCTTGCAATGGAAAGATAGTAGCAGCCAAGTACTTCTCTGCTGGGGCTGAAGCTACTGTTACCCTAAATGCTTCCAAGGATTTTCTTTCACCCTTTGATGCAGATGGACATGGCAGTTATTTATTAAGATGTATATATGTGCCTTGTTATGGCTATTTTAATTGGTTAATTTCAGTCATGTCGCATCTGTTGCTGCTGGAAATGCTGGTGTTCCTGTTGTGGCGAACGGTTTTTTCTATGGAAACGCTAGCGGAATGGCGCCACGTGCAAGGTACGATTGCTGTTTATAAGGCTATCTTTCCCTCCGTGGGAACTCTAGCAGATGTTATTGCAGCTATCGATCAAGCTGTTCTGGATGGGGTGGATATCTTATCACTCTCTGTTGGACCAAATGAACCACCAGAAAACAACGTGACCTTCTTGAGCATGTTTGATATTTCTGGTCCAGCATCTTCAAGTGTAGTGTCATTCGGTCCCTGGAGTGTTGGTGTTGCCGCTTGCACCACAGACAGAAGGTACCCTGCTTCACTTCTTGGAAATGGCTCATTACTTAATGGCGCAGGACTCTCAGCTAAGGATGCAGTAAAAACAAATGAAACAACTCTGGAGTACATAGAGGAGTGCCAACATCCAGAAGTCTTGGGCCCTAATATAGTGATGGGAAATATCATTATCTGCACCTTTTCAGCGGGCTTCAATAATGGAACCTCAACTCTTGATGCTATTATTGGAACCTCGAAGGCTCTAGGGTTGGAGGGCTTTATCTTAGTTGCAAACCCAAACTATGGAGATTATATTGCAGAGCCAATCCCTTTTGATGTTTCTGGTATTCTGATTCCCCGTGTAGATGATGCCAAGGAACTGCCAGAGTTTTGTGCTATGGCAGCTGTGGGAGAAGGAAGAGTTGCCTCTTTCACCGGGAGATCACCTGTAGTTAGTAGATTTTCTTCAAGGGGTCCAGATATCATTGACATGCACAATAATCTTGCAGATGTACTTAAACCTGATATTCTTGATATGGGCAGCATGGACCCCCATCAGTGCCTTAGAACCTATGATCAAAGGTACTTTTCTTTTCTTTTTTTGCCACACTGGCTGAATTGGCATGATTTTGCATTATTGTCTGGTACCAGCATGTCCACACCTCATTTGGCTGGAATAGCAGCACTTATAAAGCAATACAATCCATTATGGACTCCATCTATGATAGCATCTGCAATCTCCACAACAAGCTCAAAGTATGATAATCTTGGAGAGCATATGATGGCTGAAGGCTTTGAGGCCAGCAGCTTGCTTCCCTCCACTCCTTTTGAATATGGGGCAGGCTTGGTGAGCCCCAATTGTGCCATTGATCCCGGTTTGGTACTATCATCAGAACATGAAGACTTCATCAGCTTCTTGTGCTCTTTGCCAAACATGGACACGGATGCAATAATTGCAGCTACTGGTGACCAATGCAATCACCCTTATGCCTATCCATTCAGTCTAAACCTTCCTTCAGTAACAATATCTGCACTAAGAGGATCAGTTTCTGTGTGGAGAACTTTAATGAGTGTGGGGAACAACACAGAGACATACTTCGCCTCTGTTCAACCTCCAAAGGGAACAAAAGCCTACCTGTATCCAACTTGGTTTACCATAAGTCCACAAGGAACACAGGATTTGGAAATTCAACTCAGTGTCATCCAACCAATGTCGAATTTTACCTTTGGTGAAATTGTTTTAACAGGAAATTTGAACCACATTGTACGAATAACGTTGTCAGTTTTAGCAATTTCGGTGTAA

Predicted protein sequences of Glyma17g01380

Limit To All Plant Sequences

>Glyma17g01380.2   sequence type=predicted peptide   gene model=Glyma17g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFLVVAITCSQEEQSIYLVLLEGDALAFHEGSRDQDSSTIHPNTNRLIYIAARLRSSPGVKLVEKDRGAKMTTTYTPEFLSLRKGIWAQEGGDRNAGDEVVIGYVDSGINALHPSFAYDPMHPFSSNLSHFEGATCETGPLFPPSSCNGKIVAAKYFSAGAEATVTLNASKDFLSPFDADGHGSYLLRCIYVPCYGYFNWLISVMSHLLLLEMLVFLLWRTVFSMETLAEWRHVQGTIAVYKAIFPSVGTLADVIAAIDQAVLDGVDILSLSVGPNEPPENNVTFLSMFDISGPASSSVVSFGPWSVGVAACTTDRRYPASLLGNGSLLNGAGLSAKDAVKTNETTLEYIEECQHPEVLGPNIVMGNIIICTFSAGFNNGTSTLDAIIGTSKALGLEGFILVANPNYGDYIAEPIPFDVSGILIPRVDDAKELPEFCAMAAVGEGRVASFTGRSPVVSRFSSRGPDIIDMHNNLADVLKPDILDMGSMDPHQCLRTYDQRYFSFLFLPHWLNWHDFALLSGTSMSTPHLAGIAALIKQYNPLWTPSMIASAISTTSSKYDNLGEHMMAEGFEASSLLPSTPFEYGAGLVSPNCAIDPGLVLSSEHEDFISFLCSLPNMDTDAIIAATGDQCNHPYAYPFSLNLPSVTISALRGSVSVWRTLMSVGNNTETYFASVQPPKGTKAYLYPTWFTISPQGTQDLEIQLSVIQPMSNFTFGEIVLTGNLNHIVRITLSVLAISV*

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