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Report for Sequence Feature Glyma17g01361

Feature Type:gene_model
Chromosome:Gm17
Start:814254
stop:819869
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g01361
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12000AT Annotation by Michelle Graham. TAIR10: Phosphofructokinase family protein | chr1:4050159-4053727 REVERSE LENGTH=566 SoyBaseE_val: 0ISS
GO:0006084GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process SoyBaseN/AISS
GO:0006085GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA biosynthetic process SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005945GO-cc Annotation by Michelle Graham. GO Cellular Compartment: 6-phosphofructokinase complex SoyBaseN/AISS
GO:0010318GO-cc Annotation by Michelle Graham. GO Cellular Compartment: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003872GO-mf Annotation by Michelle Graham. GO Molecular Function: 6-phosphofructokinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0047334GO-mf Annotation by Michelle Graham. GO Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity SoyBaseN/AISS
KOG2440 KOG Pyrophosphate-dependent phosphofructo-1-kinase JGI ISS
PTHR13697Panther PHOSPHOFRUCTOKINASE JGI ISS
PF00365PFAM Phosphofructokinase JGI ISS
UniRef100_G7JKF2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pyrophosphate-fructose 6-phosphate 1-phosphotransferase subunit beta n=1 Tax=Medicago truncatula RepID=G7JKF2_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233EDCFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EDCF related cluster n=1 Tax=unknown RepID=UPI000233EDCF SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g01361
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g01361 not represented in the dataset
Glyma17g01361 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01361
ParalogEvidenceComments
Glyma07g39380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01361 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g010100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g01361
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g01361
>Glyma17g01361.1   sequence type=CDS   gene model=Glyma17g01361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCGTCTTTCGCAATCAACGGCGCTTTCCCCAGCGCCAGAGTCACTCCTCCTTCCGTCACCGGCCGATTCGCCGCCGTCTACAGCGAGGTCCAAAACAGCCGCATCGACCACGCCCTCCCTCTCCCCTCCGTTCTCAAAAACCCTTTCATCATCGTCGACGGTCCCCAAAGCTCCGCCGCCGGCAACCCTGAGGAGATCGCGAAGCTGTTTCCGAACCTGTTCGGGCAACCGTCGGCGGCTTTGGTGCCGAGCGATTCCCACGCGCTGCCTGTAAATCAGAAGCTGAAGATTGGCGTGGTTCTATCCGGTGGTCAGGCTCCCGGCGGTCACAATGTCATTTCTGGAATCTTCGATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTGGTCCAGCTGGCATCATGAACTTCACATATTCCTTTGTTTATTCGAATATGGTTGTGTGGAATAAATATTTTCCTTTCACTGTCATGCTGTTTGGTGGTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAGTTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAGACTTGGACGGCCTTGTTGTTATTGGTGGAGATGACTCGAACACAAATGCATGCCTCCTTGCTGAGCATTTCAGGAGTAAAAATATGAAAACTCGTGTGATTGGGTGCCCTAAAACCATTGATGGTGATTTGAAATGCAAAGAAGTTCCCACAAGTTTTGGGTTTGATACAGCATGCAAGATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTTTGTTCGGCTTATGGGACGTGCAGCTTCACACATTACACTGGAATGTGCTTTGCAAACTCATCCGAACATTACTATTATTGGAGAAGAGGTTGCTGCCAAGAAGATGACACTGAAGGATGTCACTGACTACATTGTTAATATCATTTCTAAAAGAGCTGAGGATAATTATAACTATGGGGTCATTCTTATCCCTGAAGGTCTAATTGATTTCATTCCCGAGGTCCAACACCTTATTGCAGAACTCAATGAAATTCTGGCCCATGATACTGTGGATGAGGGAGGGCTATGGAAGAAGAAACTCACTGATCAGTCATTAAAGCTTTTCGAATTTTTACCTAAAGCAATGCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGGTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGAGAAGAGAAAGCAACAGGGCTCATATAAAGGCGGATTTAGGGGGCAGTCCCACTTTTTCGGCTATGAAGGGAGATGTGGCTTGCCAACGAATTTTGATTCTACTTACTGCTATGCATTGGGTTATGGTGCTGCAGCCCTCCTTCAAAGTGGGAAGACTGGATTAATATCATCGGTTGGTAATTTGTGTGCTCCTGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACTTCATTGATGGACGTGGAGAGGAGACATGGTAAATTCAAACCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAAATCGCTACATTAGTCCAGGTCCAATTCAATTCACTGGCCGAGGATCTGATGCAATTAATCACACTTTACTCTTGGAGTTTGGTGCACAAGCTTAA
Predicted protein sequences of Glyma17g01361
>Glyma17g01361.1   sequence type=predicted peptide   gene model=Glyma17g01361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSFAINGAFPSARVTPPSVTGRFAAVYSEVQNSRIDHALPLPSVLKNPFIIVDGPQSSAAGNPEEIAKLFPNLFGQPSAALVPSDSHALPVNQKLKIGVVLSGGQAPGGHNVISGIFDYLQDLAEGSTLYGFRGGPAGIMNFTYSFVYSNMVVWNKYFPFTVMLFGGFDMIRSGRDKIETPEQFKQAEETVQKLDLDGLVVIGGDDSNTNACLLAEHFRSKNMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKMTLKDVTDYIVNIISKRAEDNYNYGVILIPEGLIDFIPEVQHLIAELNEILAHDTVDEGGLWKKKLTDQSLKLFEFLPKAMQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQQGSYKGGFRGQSHFFGYEGRCGLPTNFDSTYCYALGYGAAALLQSGKTGLISSVGNLCAPVEEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFTGRGSDAINHTLLLEFGAQA*






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