SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G22300 | AT | Annotation by Michelle Graham. TAIR10: carboxylesterases | chr4:11787560-11789252 REVERSE LENGTH=262 | SoyBase | E_val: 1.00E-125 | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2112 | KOG | Lysophospholipase | JGI | ISS | |
| PTHR10655 | Panther | LYSOPHOSPHOLIPASE-RELATED | JGI | ISS | |
| PTHR10655:SF6 | Panther | gb def: putative protein [arabidopsis thaliana] | JGI | ISS | |
| PF02230 | PFAM | Phospholipase/Carboxylesterase | JGI | ISS | |
| UniRef100_C6TE76 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TE76_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JKH0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acyl-protein thioesterase n=1 Tax=Medicago truncatula RepID=G7JKH0_MEDTR | SoyBase | E_val: 6.00E-140 | ISS |
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Glyma17g01270 not represented in the dataset |
Glyma17g01270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g39481 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g009100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g01270.3 sequence type=transcript gene model=Glyma17g01270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTGGGGTGTTTGAGGAAATTAAGAAAAGAGAAGGGTGGTACTGGACACTGGTTGAAGGGTAGGGATGAAATGAGAGCGAGAGGAGATGAAGCTGATAAAGGGCAGTGTTGTGTTAACAATCACAATCACATTAAGTAGCGCCATTCTGTTGCTACTATTGTTCCCACAAAACCAAAAGCCATCTTCTTCTTCCATGTCGAGGGCGCGAAGCTTTGTTCTGTGGCTTCACGGCCTGGGTGACTCTGGTCCCGCCAACGAACCCATCAAAACCTTATTCACTTCTTCCCAATTCAGAGACACCAAATGGTCCTTCCCTTCTGCCCCTTCCGCCCCTGTCACTTGCAACTATGGTTCTGTAATGCCTTCATGGTTTGACATTCTTGAGATTCCCGTGGCAGCTGATTCTCCAAATGACGAGAGTAGTTTACTTAAAGCTGTTCGAAATGTGCATGCTACTATAGACAAGGAAATAGCTGCTGGCATAAACCCTAACAACATATTTATCTGTGGATTCAGTCAAGGAGGTGCCTTGACCTTGGCTAGTGTTCTACTGTACCCTAAAACTTTAGGTGGAGGTGCAGTCTTTAGTGGTTGGGTTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGGCTTATCCTGGTCTAGGCCACACGATAAACAATGAGGAGCTGCTGTATCTCGAGTCGTGGATCAAGGCACGCCTACAAAGTTCTTCCCAATAATTATTTCGGCCTGGAATAATATAATCTAAACATAAGCTTTTACTTGTGGAGACCCCGGATCAGTTTGTTGTTTATTTTCGCTTTATTCATAATGTTTAACAGGAATGGAAATGATCTTAATGTGTGTTTCGTATAACGTTGCATAAGTCTGAAAATTTTCACGTCAATTTGCGAATTCGCGCAGAAGCTATACACGTGCCTATTTGGATTCATGTTCTACTAGCAAGAATGCAGTGAAAACTTGAGGCTATTTGAACATGGTTTGCTTTTTACATAATTATCATTTATGAAAACATGGGTAATAATGATCATGGCC
>Glyma17g01270.1 sequence type=CDS gene model=Glyma17g01270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTGATAAAGGGCAGTGTTGTGTTAACAATCACAATCACATTAAGTAGCGCCATTCTGTTGCTACTATTGTTCCCACAAAACCAAAAGCCATCTTCTTCTTCCATGTCGAGGGCGCGAAGCTTTGTTCTGTGGCTTCACGGCCTGGGTGACTCTGGTCCCGCCAACGAACCCATCAAAACCTTATTCACTTCTTCCCAATTCAGAGACACCAAATGGTCCTTCCCTTCTGCCCCTTCCGCCCCTGTCACTTGCAACTATGGTTCTGTAATGCCTTCATGGTTTGACATTCTTGAGATTCCCGTGGCAGCTGATTCTCCAAATGACGAGAGTAGTTTACTTAAAGCTGTTCGAAATGTGCATGCTACTATAGACAAGGAAATAGCTGCTGGCATAAACCCTAACAACATATTTATCTGTGGATTCAGTCAAGGAGGTGCCTTGACCTTGGCTAGTGTTCTACTGTACCCTAAAACTTTAGGTGGAGGTGCAGTCTTTAGTGGTTGGGTTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAGGCCGGACAAGCAGGTCCCCCGTTCCTTGAAAAAATTGGTGTGGGATGCGAGTTTAAGGCTTATCCTGGTCTAGGCCACACGATAAACAATGAGGAGCTGCTGTATCTCGAGTCGTGGATCAAGGCACGCCTACAAAGTTCTTCCCAATAA >Glyma17g01270.3 sequence type=CDS gene model=Glyma17g01270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTGATAAAGGGCAGTGTTGTGTTAACAATCACAATCACATTAAGTAGCGCCATTCTGTTGCTACTATTGTTCCCACAAAACCAAAAGCCATCTTCTTCTTCCATGTCGAGGGCGCGAAGCTTTGTTCTGTGGCTTCACGGCCTGGGTGACTCTGGTCCCGCCAACGAACCCATCAAAACCTTATTCACTTCTTCCCAATTCAGAGACACCAAATGGTCCTTCCCTTCTGCCCCTTCCGCCCCTGTCACTTGCAACTATGGTTCTGTAATGCCTTCATGGTTTGACATTCTTGAGATTCCCGTGGCAGCTGATTCTCCAAATGACGAGAGTAGTTTACTTAAAGCTGTTCGAAATGTGCATGCTACTATAGACAAGGAAATAGCTGCTGGCATAAACCCTAACAACATATTTATCTGTGGATTCAGTCAAGGAGGTGCCTTGACCTTGGCTAGTGTTCTACTGTACCCTAAAACTTTAGGTGGAGGTGCAGTCTTTAGTGGTTGGGTTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGGCTTATCCTGGTCTAGGCCACACGATAAACAATGAGGAGCTGCTGTATCTCGAGTCGTGGATCAAGGCACGCCTACAAAGTTCTTCCCAATAA
>Glyma17g01270.1 sequence type=predicted peptide gene model=Glyma17g01270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLIKGSVVLTITITLSSAILLLLLFPQNQKPSSSSMSRARSFVLWLHGLGDSGPANEPIKTLFTSSQFRDTKWSFPSAPSAPVTCNYGSVMPSWFDILEIPVAADSPNDESSLLKAVRNVHATIDKEIAAGINPNNIFICGFSQGGALTLASVLLYPKTLGGGAVFSGWVPFNSSIIEQITPEAKQTPILWSHGLVDRTVMFEAGQAGPPFLEKIGVGCEFKAYPGLGHTINNEELLYLESWIKARLQSSSQ* >Glyma17g01270.3 sequence type=predicted peptide gene model=Glyma17g01270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLIKGSVVLTITITLSSAILLLLLFPQNQKPSSSSMSRARSFVLWLHGLGDSGPANEPIKTLFTSSQFRDTKWSFPSAPSAPVTCNYGSVMPSWFDILEIPVAADSPNDESSLLKAVRNVHATIDKEIAAGINPNNIFICGFSQGGALTLASVLLYPKTLGGGAVFSGWVPFNSSIIEQITPEAKQAYPGLGHTINNEELLYLESWIKARLQSSSQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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