Glyma17g01210 - SoyBase

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Report for Sequence Feature Glyma17g01210

Feature Type:	gene_model
Chromosome:	Gm17
Start:	704329
stop:	710650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g01210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12570	AT	Annotation by Michelle Graham. TAIR10: ubiquitin protein ligase 5 \| chr4:7445585-7448819 FORWARD LENGTH=873	SoyBase	E_val: 0	ISS
GO:0006464	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein modification process	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009755	GO-bp	Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0940	KOG	Ubiquitin protein ligase RSP5/NEDD4	JGI		ISS
PTHR11254	Panther	UBIQUITIN-PROTEIN LIGASE	JGI		ISS
PTHR11254:SF52	Panther	GUANINE NUCLEOTIDE EXCHANGE FACTOR P532	JGI		ISS
PF00240	PFAM	Ubiquitin family	JGI		ISS
PF00632	PFAM	HECT-domain (ubiquitin-transferase)	JGI		ISS
UniRef100_G7JKJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin n=1 Tax=Medicago truncatula RepID=G7JKJ3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EF22	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF22 related cluster n=1 Tax=unknown RepID=UPI000233EF22	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g01210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01210

Paralog	Evidence	Comments
Glyma07g39546	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g008400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g01210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g01210

Limit To All Plant Sequences

>Glyma17g01210.2   sequence type=CDS   gene model=Glyma17g01210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTCATCGAAACCCCCGCCGTCCACCACCGCAGCGGGGGCTCAACCGATCACCGTCACCCTTCCAAGCGCAAATTTGACGATGAAGACGACGAGGATTTCTCGGACTTAGTCTGCGTGAGGATGCGGAAAGACGAGGCCAAGGCGGTGAATTCCTGGTCCGCCTCCTCCTCCGACGCCGGCGGCTGCTCCGCCTTGCAGCGCCAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTGCGGCGGAAACACGATTGTGATGCAAGCCTTCCCCGAAGACAGCGTGAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCATTGTTCGAGCAGAGGCTTATTTATCGCGGTAAGCAGCTCCAGTGGGAACAGACTCTGGCCGAGTGTTCCATTCAAAACGACGCCAACCTTCAATTAGTTGGTCGTATGCGCAGCACCGAACACCCTCAAGCCTGGCAAGTTATCAACGACATGGTTTCTCTCGTTTACCGTCTTTGCTGCGGCGAAACTGTTCACGATTCCTTGAAGACTATCAAGGGTTTGATCACCAGTTACTTGAACATGACGCCCAGAATTGACAACGACTCTGCCTCTGGTTACTTTCAGATTTTCATGTCTTCTTCTGCCCCTGCCGTGCTTGTTATGCTCTACGTGTCCCCTTACGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGGCACTTTTTGAGTTCTTGTCGCACTACTTTGTCTAAGGCATTGCACGGGCAGTGTGCGCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGCTGTCAAGACCCTTTGTATCTCTATTGTCGGAGTGCTTTTGGGTCCTTGTTGGAAACTGCTGGAGTTTCCTATGCTGCTTCTGCTTCTGGCAATGTTAAGGGGCTGGTTTCGATTCAGGATATTTTCCCCTTTGTTCGTGATCTTGCCAGTAGCTTGTTGAGGGATTTGGACTTGAGTATGGTATCCCCCACGGCCGTGGGGCCTTTGTCAAACGATGTTGGGGATTTTTCTGCATTCTTAATGCCTTTGAGGACTGGAATTAAGGAGCAACAAGCTGTCAAGAATGCTATGCCTCAAGACAAACGCCATAAGGATCTCTTGCTCGCGGAAGAGATTGAACATCTTCATGGTTTGTACATTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGGACCAAAATTTGACTGGCCGGGAAATGATGGAAGGGGATAATCTTTATCCTGCTTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCCAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGCATTTTGACACGGCAAAGAAGTGTGCTGTGTCTGCTGATTGTTCGATATGCGAAGAGAACTGATGAGCATCAGTGGATTCTTGAGCATAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCGGAGGTGAAAGAGGACTATGAAGAGTTACACGAGATGCTTATTGACAGGTCTCAGTTATTGACCGAGTCATTTGAATACATAGCACGTGCTGAGCCCGAATCTCTGCATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTATTAAGGGAGTGGTTTCTTCTGGTATGTCAAGCAATATTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGATCAAAGGAGATTTTTCCCTAATCCCGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTATAGAAGATATAAGGGATGCAGATCCTTATCTGTATACAAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGACGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTGGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCGATTCGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAAGGTTTTGCAGATATTCTTTCAAACTCAAAGTTCCAGCAGTACTTCTTCCAAAGTTTAGACCTCGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACATACTGAGTATAATGGCTATAAAGATACAGATATTCACATATCTTGGTTTTGGGAGATTGTTGAAAGAATGACAGCAGATCAAAGGAAGGTTCTTTTATTCTTTTGGACATCTGTAAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGTCTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTGTGTTTCCCAGCTTATTCTTCTATTGCTGTCATGAAAGATCGTCTTGAAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA

Predicted protein sequences of Glyma17g01210

Limit To All Plant Sequences

>Glyma17g01210.2   sequence type=predicted peptide   gene model=Glyma17g01210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVIETPAVHHRSGGSTDHRHPSKRKFDDEDDEDFSDLVCVRMRKDEAKAVNSWSASSSDAGGCSALQRQQRSHIQFFVRMMCGGNTIVMQAFPEDSVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRTTLSKALHGQCARVVLEFCKLLRRVGCQDPLYLYCRSAFGSLLETAGVSYAASASGNVKGLVSIQDIFPFVRDLASSLLRDLDLSMVSPTAVGPLSNDVGDFSAFLMPLRTGIKEQQAVKNAMPQDKRHKDLLLAEEIEHLHGLYIQLLNKIDQCLQKMDQNLTGREMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWSILTRQRSVLCLLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDQRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIAIEDIRDADPYLYTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFVTSISEQVSHFAKGFADILSNSKFQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKDTDIHISWFWEIVERMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSIAVMKDRLEVITQEHIGCSFGTW*

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