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Report for Sequence Feature Glyma17g01201

Feature Type:gene_model
Chromosome:Gm17
Start:693838
stop:695838
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g01201
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G12570AT Annotation by Michelle Graham. TAIR10: ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873 SoyBaseE_val: 8.00E-135ISS
GO:0006464GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein modification process SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009755GO-bp Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
PTHR11254Panther UBIQUITIN-PROTEIN LIGASE JGI ISS
PTHR11254:SF52Panther GUANINE NUCLEOTIDE EXCHANGE FACTOR P532 JGI ISS
PF00632PFAM HECT-domain (ubiquitin-transferase) JGI ISS
UniRef100_G7JKJ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin n=1 Tax=Medicago truncatula RepID=G7JKJ3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MR07UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MR07_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g01201
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g01201 not represented in the dataset
Glyma17g01201 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g01201 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma17g01201
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g01201
>Glyma17g01201.1   sequence type=CDS   gene model=Glyma17g01201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAGACAAATTCCATAAGGATCTCTTGCTCGCGGGAGAGATTCAATATCTTCATGGTTTGTCCATTCAGTTGTTGGACAAAACTGATCAGTGCCTTCAAAAAATGGACCAAAGTTTGGCTGGCCGGGAAATGATGGAAGGGGATAATCTTTATCCTGCTTGTTCTCATTGTCTTTCAATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGGGCTGAAGAAAAGCTTTGGGGGTTTCGATATGCGAAGAGAACCGATGAGCATCAGTGGATTCTAAAGCGTAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATCTTCCCGGAGGTAAAAGAAGACTACAAGGAGTTGCGCAAGATGCTTATTGACAGGTCTCAGTTATTGGCTGAGTCTTTTGAATGCATAGCACTTGCTGAGCCTGAATCTCTACATGCTGGCCTGTTTATGAAATTCCAAAATGAGGAACCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTCTAGTATGTCAAGCAATATTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGATCAAAGGAGATTTTTCCCTTATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTTATTGCATTAGCTTTGATGCAAAGGGTGCAAGTGGGTATTGTTTTTGATCGTGCGTTTTTCTTGCAATTGGCGGGAAACTCTATTACATTAGAAGATATAAGGGATGCAGATCCTTATCTGTATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTAGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATATTCTTATACAGGATCACTTCGTAACATCCATATCTGAGCAGGTACCACATTTTGTCAATGGTTTTGCAGATATTCTCTCAAAGTCAAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTCGAAGATCTTGATTCGATACTGCATGGGAGTGTTGCC
Predicted protein sequences of Glyma17g01201
>Glyma17g01201.1   sequence type=predicted peptide   gene model=Glyma17g01201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQDKFHKDLLLAGEIQYLHGLSIQLLDKTDQCLQKMDQSLAGREMMEGDNLYPACSHCLSILKELYQISKLYDGAEEKLWGFRYAKRTDEHQWILKRRCVTNFESRRHLAMMIFPEVKEDYKELRKMLIDRSQLLAESFECIALAEPESLHAGLFMKFQNEEPTGPGVLREWFLLVCQAIFNPQNALFVACPNDQRRFFPYPASKVHPLHLEYFSFAGRVIALALMQRVQVGIVFDRAFFLQLAGNSITLEDIRDADPYLYTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDILIQDHFVTSISEQVPHFVNGFADILSKSKLQQYFFQSLDLEDLDSILHGSVA






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