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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47530 | AT | Annotation by Michelle Graham. TAIR10: Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395 | SoyBase | E_val: 4.00E-135 | ISS |
| GO:0007275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organismal development | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| KOG4293 | KOG | Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains | JGI | ISS | |
| PTHR23130 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR23130:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03188 | PFAM | Eukaryotic cytochrome b561 | JGI | ISS | |
| PF04526 | PFAM | Protein of unknown function (DUF568) | JGI | ISS | |
| UniRef100_G7IP86 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced in root cultures protein n=1 Tax=Medicago truncatula RepID=G7IP86_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MR00 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MR00_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g01170 not represented in the dataset |
Glyma17g01170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g39630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g008000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g01170.2 sequence type=transcript gene model=Glyma17g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGGGAAGTAGGAATATAGATTATTCTTCCTGGAAAAAATCAAAACACCTTAACAAGGAAGCTTCCGAACTGTGGGCGGGGATAGTTAATTCTTATGATTGGTGTGGAAGATTTCATAAAAGGCATTATTCCGAACGGTGGGCGGGGAAGTGTTTAATTAGTCAATAACTTAACAACTCAACCAGCAAGAGCCACCAACTCTTATACTGTTATAAATAAAGTAACCCTCTCATTCCCTCCACTACCTGCTCCATTGTTTACATCACGAGAAACAACGCCACGCTGAAATCCCTTTTTTGTGTCCATGGGCAGCAGCATGCTGAGGCTAGTGTTGGGCTTGTCTGTTTTGAGTTGTGTGCTTGTGACATCCTCAGCTCAAACGTGCAGAAACCAAACATTCTCAAACAGGGTGTTTGCCACATGTCGTGATCTTCCACAGTTGACGGCTTACCTGCACTGGACATACGACCAGGCTAGTGGGAGGTTGGAGATAGCATTCAAACACGCTGGAATCACCTCGACCAACAGGTGGGTTGCATGGGCCATCAATCCCAGAAACACCCTCGACCCAGCCATGATTGGGGCCCAGGCCCTGGTGGCTATCCCTCAGTCAAATGGAAGCCCAAGGGCCTATGCCTCGTCCATAACCAGCACCAGCACAACTTTGGAAGAGGGAGCTATCAGTTATCCCCTGTCCGGGTTGAGTGCTACGTTTGAGAACAACGAGGTCACCATTTTCGCCACTCTCACACTTCCAAACGGGACCACCTCCTTTGTCCACGTCTGGCAAGATGGCCCTCTCTCTGGAACTACCCCACGAGAGCATAGCCACGAGACTTCCCACCAAAACTCCAAGGAAATCTTGGATCTTCTCTCTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAACACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGTGCCATAATCGCAAGGTACTTGAAGGTGTTCAAGTCTGCAGACCCTACTTGGTTTTATCTCCACATCACCTGCCAAGCCTCTGCCTACATAGTTGGTGTTTCTGGATTAGGCACCGGTCTCAAACTCGGCAGTGACTCAGAGGGTGTTGACTATGACACCCACAGAGCACTTGGTGTTTGCGCTGTTCTTGAGGCCCAACAAGGACCATAAGTACAGAGTGTACTGGAATGTGTACCACCACTTGGTCGGATATGCTACCATAATCATCAGTGTCGTCAACATTTTCGAAGGGTTCGAAACCATAGAAAAATACGTAGGGGATCGCTACAATAGCTGGAAGCATGCGTACATTGGTATTATTGGAGCATTGGCTGGCATTGCTGTCTTTTTGGAAGCTTTCACATGGATCATAGTCTTCAAGAGGAGGAAGTCAGAGAACAAGATTCCACACGGAGCAAATGGTGCTAATGGGTATGGTTCTAGGCCACAACAGGTGTAGGATACGATGTGTAGCCAGATAAATATTGGTTTCTTTTGTAATTTTATGCCTTTTTACTCCTAGACGTGTGTATTTTATTGTATAATGTTGAGGGTATTTAAGGTTACTCCAGCTGCTTAGAGTCTCTTTTTTGAGGTAATTCTTTCATAGGGTTTTAGGTTCTGCTTTTATCCATACTGTTACTACAGGGTATAGCATTGTATTGGTTTCTGTTTGAAGAATTTTTGTATTAATTATTTTTTACTTATGTCTTACTTTTTCTACATATCTTCAGTTTCAAATAGAATCTTTTACGTTCTACTGGAGCAACCTTTCTCTTTCTTTAAACAAGGAAATTTGACC >Glyma17g01170.3 sequence type=transcript gene model=Glyma17g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGGGAAGTAGGAATATAGATTATTCTTCCTGGAAAAAATCAAAACACCTTAACAAGGAAGCTTCCGAACTGTGGGCGGGGATAGTTAATTCTTATGATTGGTGTGGAAGATTTCATAAAAGGCATTATTCCGAACGGTGGGCGGGGAAGTGTTTAATTAGTCAATAACTTAACAACTCAACCAGCAAGAGCCACCAACTCTTATACTGTTATAAATAAAGTAACCCTCTCATTCCCTCCACTACCTGCTCCATTGTTTACATCACGAGAAACAACGCCACGCTGAAATCCCTTTTTTGTGTCCATGGGCAGCAGCATGCTGAGGCTAGTGTTGGGCTTGTCTGTTTTGAGTTGTGTGCTTGTGACATCCTCAGCTCAAACGTGCAGAAACCAAACATTCTCAAACAGGGTGTTTGCCACATGTCGTGATCTTCCACAGTTGACGGCTTACCTGCACTGGACATACGACCAGGCTAGTGGGAGGTTGGAGATAGCATTCAAACACGCTGGAATCACCTCGACCAACAGGTGGGTTGCATGGGCCATCAATCCCAGAAACACCCTCGACCCAGCCATGATTGGGGCCCAGGCCCTGGTGGCTATCCCTCAGTCAAATGGAAGCCCAAGGGCCTATGCCTCGTCCATAACCAGCACCAGCACAACTTTGGAAGAGGGAGCTATCAGTTATCCCCTGTCCGGGTTGAGTGCTACGTTTGAGAACAACGAGGTCACCATTTTCGCCACTCTCACACTTCCAAACGGGACCACCTCCTTTGTCCACGTCTGGCAAGATGGCCCTCTCTCTGGAACTACCCCACGAGAGCATAGCCACGAGACTTCCCACCAAAACTCCAAGGAAATCTTGGATCTTCTCTCTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAACGTGTTTGCGCTGTTCTTGAGGCCCAACAAGGACCATAAGTACAGAGTGTACTGGAATGTGTACCACCACTTGGTCGGATATGCTACCATAATCATCAGTGTCGTCAACATTTTCGAAGGGTTCGAAACCATAGAAAAATACGTAGGGGATCGCTACAATAGCTGGAAGCATGCGTACATTGGTATTATTGGAGCATTGGCTGGCATTGCTGTCTTTTTGGAAGCTTTCACATGGATCATAGTCTTCAAGAGGAGGAAGTCAGAGAACAAGATTCCACACGGAGCAAATGGTGCTAATGGGTATGGTTCTAGGCCACAACAGGTGTAGGATACGATGTGTAGCCAGATAAATATTGGTTTCTTTTGTAATTTTATGCCTTTTTACTCCTAGACGTGTGTATTTTATTGTATAATGTTGAGGGTATTTAAGGTTACTCCAGCTGCTTAGAGTCTCTTTTTTGAGGTAATTCTTTCATAGGGTTTTAGGTTCTGCTTTTATCCATACTGTTACTACAGGGTATAGCATTGTATTGGTTTCTGTTTGAAGAATTTTTGTATTAATTATTTTTTACTTATGTCTTACTTTTTCTACATATCTTCAGTTTCAAATAGAATCTTTTACGTTCTACTGGAGCAACCTTTCTCTTTCTTTAAACAAGGAAATTTGACC
>Glyma17g01170.1 sequence type=CDS gene model=Glyma17g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCAGCATGCTGAGGCTAGTGTTGGGCTTGTCTGTTTTGAGTTGTGTGCTTGTGACATCCTCAGCTCAAACGTGCAGAAACCAAACATTCTCAAACAGGGTGTTTGCCACATGTCGTGATCTTCCACAGTTGACGGCTTACCTGCACTGGACATACGACCAGGCTAGTGGGAGGTTGGAGATAGCATTCAAACACGCTGGAATCACCTCGACCAACAGGTGGGTTGCATGGGCCATCAATCCCAGAAACACCCTCGACCCAGCCATGATTGGGGCCCAGGCCCTGGTGGCTATCCCTCAGTCAAATGGAAGCCCAAGGGCCTATGCCTCGTCCATAACCAGCACCAGCACAACTTTGGAAGAGGGAGCTATCAGTTATCCCCTGTCCGGGTTGAGTGCTACGTTTGAGAACAACGAGGTCACCATTTTCGCCACTCTCACACTTCCAAACGGGACCACCTCCTTTGTCCACGTCTGGCAAGATGGCCCTCTCTCTGGAACTACCCCACGAGAGCATAGCCACGAGACTTCCCACCAAAACTCCAAGGAAATCTTGGATCTTCTCTCTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAACACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGTGCCATAATCGCAAGGTACTTGAAGGTGTTCAAGTCTGCAGACCCTACTTGGTTTTATCTCCACATCACCTGCCAAGCCTCTGCCTACATAGTTGGTGTTTCTGGATTAGGCACCGGTCTCAAACTCGGCAGTGACTCAGAGGGTGTTGACTATGACACCCACAGAGCACTTGGTATTGTCCTCGTCTGCCTTGGAACTCTTCAGGTGTTTGCGCTGTTCTTGAGGCCCAACAAGGACCATAAGTACAGAGTGTACTGGAATGTGTACCACCACTTGGTCGGATATGCTACCATAATCATCAGTGTCGTCAACATTTTCGAAGGGTTCGAAACCATAGAAAAATACGTAGGGGATCGCTACAATAGCTGGAAGCATGCGTACATTGGTATTATTGGAGCATTGGCTGGCATTGCTGTCTTTTTGGAAGCTTTCACATGGATCATAGTCTTCAAGAGGAGGAAGTCAGAGAACAAGATTCCACACGGAGCAAATGGTGCTAATGGGTATGGTTCTAGGCCACAACAGGTGTAG >Glyma17g01170.2 sequence type=CDS gene model=Glyma17g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCAGCATGCTGAGGCTAGTGTTGGGCTTGTCTGTTTTGAGTTGTGTGCTTGTGACATCCTCAGCTCAAACGTGCAGAAACCAAACATTCTCAAACAGGGTGTTTGCCACATGTCGTGATCTTCCACAGTTGACGGCTTACCTGCACTGGACATACGACCAGGCTAGTGGGAGGTTGGAGATAGCATTCAAACACGCTGGAATCACCTCGACCAACAGGTGGGTTGCATGGGCCATCAATCCCAGAAACACCCTCGACCCAGCCATGATTGGGGCCCAGGCCCTGGTGGCTATCCCTCAGTCAAATGGAAGCCCAAGGGCCTATGCCTCGTCCATAACCAGCACCAGCACAACTTTGGAAGAGGGAGCTATCAGTTATCCCCTGTCCGGGTTGAGTGCTACGTTTGAGAACAACGAGGTCACCATTTTCGCCACTCTCACACTTCCAAACGGGACCACCTCCTTTGTCCACGTCTGGCAAGATGGCCCTCTCTCTGGAACTACCCCACGAGAGCATAGCCACGAGACTTCCCACCAAAACTCCAAGGAAATCTTGGATCTTCTCTCTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAACACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGTGCCATAATCGCAAGGTACTTGAAGGTGTTCAAGTCTGCAGACCCTACTTGGTTTTATCTCCACATCACCTGCCAAGCCTCTGCCTACATAGTTGGTGTTTCTGGATTAGGCACCGGTCTCAAACTCGGCAGTGACTCAGAGGGTGTTGACTATGACACCCACAGAGCACTTGGTGTTTGCGCTGTTCTTGAGGCCCAACAAGGACCATAA >Glyma17g01170.3 sequence type=CDS gene model=Glyma17g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCAGCATGCTGAGGCTAGTGTTGGGCTTGTCTGTTTTGAGTTGTGTGCTTGTGACATCCTCAGCTCAAACGTGCAGAAACCAAACATTCTCAAACAGGGTGTTTGCCACATGTCGTGATCTTCCACAGTTGACGGCTTACCTGCACTGGACATACGACCAGGCTAGTGGGAGGTTGGAGATAGCATTCAAACACGCTGGAATCACCTCGACCAACAGGTGGGTTGCATGGGCCATCAATCCCAGAAACACCCTCGACCCAGCCATGATTGGGGCCCAGGCCCTGGTGGCTATCCCTCAGTCAAATGGAAGCCCAAGGGCCTATGCCTCGTCCATAACCAGCACCAGCACAACTTTGGAAGAGGGAGCTATCAGTTATCCCCTGTCCGGGTTGAGTGCTACGTTTGAGAACAACGAGGTCACCATTTTCGCCACTCTCACACTTCCAAACGGGACCACCTCCTTTGTCCACGTCTGGCAAGATGGCCCTCTCTCTGGAACTACCCCACGAGAGCATAGCCACGAGACTTCCCACCAAAACTCCAAGGAAATCTTGGATCTTCTCTCTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAACGTGTTTGCGCTGTTCTTGAGGCCCAACAAGGACCATAAGTACAGAGTGTACTGGAATGTGTACCACCACTTGGTCGGATATGCTACCATAATCATCAGTGTCGTCAACATTTTCGAAGGGTTCGAAACCATAGAAAAATACGTAGGGGATCGCTACAATAGCTGGAAGCATGCGTACATTGGTATTATTGGAGCATTGGCTGGCATTGCTGTCTTTTTGGAAGCTTTCACATGGATCATAGTCTTCAAGAGGAGGAAGTCAGAGAACAAGATTCCACACGGAGCAAATGGTGCTAATGGGTATGGTTCTAGGCCACAACAGGTGTAG
>Glyma17g01170.1 sequence type=predicted peptide gene model=Glyma17g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSSMLRLVLGLSVLSCVLVTSSAQTCRNQTFSNRVFATCRDLPQLTAYLHWTYDQASGRLEIAFKHAGITSTNRWVAWAINPRNTLDPAMIGAQALVAIPQSNGSPRAYASSITSTSTTLEEGAISYPLSGLSATFENNEVTIFATLTLPNGTTSFVHVWQDGPLSGTTPREHSHETSHQNSKEILDLLSGSSTQPTGNSRQRRRNTHGVLNAVSWGILMPTGAIIARYLKVFKSADPTWFYLHITCQASAYIVGVSGLGTGLKLGSDSEGVDYDTHRALGIVLVCLGTLQVFALFLRPNKDHKYRVYWNVYHHLVGYATIIISVVNIFEGFETIEKYVGDRYNSWKHAYIGIIGALAGIAVFLEAFTWIIVFKRRKSENKIPHGANGANGYGSRPQQV* >Glyma17g01170.2 sequence type=predicted peptide gene model=Glyma17g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSSMLRLVLGLSVLSCVLVTSSAQTCRNQTFSNRVFATCRDLPQLTAYLHWTYDQASGRLEIAFKHAGITSTNRWVAWAINPRNTLDPAMIGAQALVAIPQSNGSPRAYASSITSTSTTLEEGAISYPLSGLSATFENNEVTIFATLTLPNGTTSFVHVWQDGPLSGTTPREHSHETSHQNSKEILDLLSGSSTQPTGNSRQRRRNTHGVLNAVSWGILMPTGAIIARYLKVFKSADPTWFYLHITCQASAYIVGVSGLGTGLKLGSDSEGVDYDTHRALGVCAVLEAQQGP* >Glyma17g01170.3 sequence type=predicted peptide gene model=Glyma17g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSSMLRLVLGLSVLSCVLVTSSAQTCRNQTFSNRVFATCRDLPQLTAYLHWTYDQASGRLEIAFKHAGITSTNRWVAWAINPRNTLDPAMIGAQALVAIPQSNGSPRAYASSITSTSTTLEEGAISYPLSGLSATFENNEVTIFATLTLPNGTTSFVHVWQDGPLSGTTPREHSHETSHQNSKEILDLLSGSSTQPTGNSRQRRRNVFALFLRPNKDHKYRVYWNVYHHLVGYATIIISVVNIFEGFETIEKYVGDRYNSWKHAYIGIIGALAGIAVFLEAFTWIIVFKRRKSENKIPHGANGANGYGSRPQQV*
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