Glyma17g01160 - SoyBase

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Report for Sequence Feature Glyma17g01160

Feature Type:	gene_model
Chromosome:	Gm17
Start:	665467
stop:	668559
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g01160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16490	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr4:9293891-9295530 REVERSE LENGTH=472	SoyBase	E_val: 0	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PTHR23315:SF33	Panther	OS07G0584900 PROTEIN	JGI		ISS
PF00514	PFAM	Armadillo/beta-catenin-like repeat	JGI		ISS
UniRef100_B9SQF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SQF9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MQZ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQZ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g01160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g01160

Paralog	Evidence	Comments
Glyma07g39640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g01160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g007900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g01160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g01160

Limit To All Plant Sequences

>Glyma17g01160.2   sequence type=CDS   gene model=Glyma17g01160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCGCGGAGAAAGATTCCAATGAAACTCATCGAACCATCATCGGGAAGTCCATGCGAACGGTGCGCTCCAAAATATTCCAACACGACCACGCCACGTGCGTCTCCGACAACTTAACCGGTTCGCTAATGGAACTCGCATCGCGAAACAACAAATCCGTTAAGTCTTCAATTACGGAGGAGCAACTCCTCGAGCTCTCTCAAGCTCTGAGCGATTTCTCCGCCTGTAGCAGCGATATCTCCGGGGAGCTCCAGAGACTCGCCACCGTCTCCTCCTCCCAACCTCCTGCTGCTGCTGCTGACATCCACGGCCAACCCCAACCTGAGCCCGAGCCGTGCCTAGGGTTTCTCCAGAGGGAGAGCTTCTCCACTGAGATCATCGAGAGTATCTCGCCGGAGGATCTTCAGCCGACGGTCAAGATCTGCGTCGACGGACTTCTCTCGCCGTCGTTGGCCGTGAAGCGATCGGCGGCGGCCAAGCTGAGGCTGTTGGCGAAGAACCGAGCCGACAACCGCGCTCTCATCGGCGAGTCCGGTGCGGTGGCTGCTCTGGTTCCGCTGCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCGGTGACGGCGTTGCTGAACCTGTCTCTTCTGGAAGAGAACAAGGCGCTTATAACGAATGCGGGTGCGGTGAAGTCGCTGATATACGTGCTGAAAAGAGGGACGGAGACTTCCAAGCAGAACGCGGCGTGCGCGCTCATGAGTCTGGCGCTGGTGGAAGAGAACAAGAGATCGATCGGGACTTGCGGGGCGATACCACCGCTGGTGGCGCTGCTGTTGGGTGGGTCCCAGAGAGGGAAGAAGGACGCGCTGACGACGCTGTACAAGCTGTGTTCAGTGAGGCAGAACAAGGAGAGGGCGGTGAGTGCCGGGGCGGTGAGGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGCGGGATGGCGGAGAAGGCGATGGTGGTGCTGAACAGCTTGGCGGGGATTGAGGAGGGGAAGGAGGCCATTGTGGAAGAAGGTGGGATTGCTGCGCTTGTGGAAGCGATTGAGGTTGGGTCGGTGAAGGGGAAGGAGTTCGCTGTTTTGACTCTTTATCAACTCTGTGCTGAAACCGTTACCAACAGAGCCCTTCTCGTCAGGGAGGGAGGGATTCCGCCTCTCGTTGCTCTTTCTCAGAGCTCCCCTGTTCGAGCTAAGCTCAAGGCTGAGACACTCCTTGGATATTTGAGAGAATCAAGACATGAAGCTTCATGTTCAAGTCCGTAG

Predicted protein sequences of Glyma17g01160

Limit To All Plant Sequences

>Glyma17g01160.2   sequence type=predicted peptide   gene model=Glyma17g01160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSAEKDSNETHRTIIGKSMRTVRSKIFQHDHATCVSDNLTGSLMELASRNNKSVKSSITEEQLLELSQALSDFSACSSDISGELQRLATVSSSQPPAAAADIHGQPQPEPEPCLGFLQRESFSTEIIESISPEDLQPTVKICVDGLLSPSLAVKRSAAAKLRLLAKNRADNRALIGESGAVAALVPLLRCSDPWTQEHAVTALLNLSLLEENKALITNAGAVKSLIYVLKRGTETSKQNAACALMSLALVEENKRSIGTCGAIPPLVALLLGGSQRGKKDALTTLYKLCSVRQNKERAVSAGAVRPLVELVAEQGSGMAEKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEVGSVKGKEFAVLTLYQLCAETVTNRALLVREGGIPPLVALSQSSPVRAKLKAETLLGYLRESRHEASCSSP*

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