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Report for Sequence Feature Glyma17g01156

Feature Type:gene_model
Chromosome:Gm17
Start:662469
stop:664218
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g01156
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16480AT Annotation by Michelle Graham. TAIR10: inositol transporter 4 | chr4:9291246-9293083 FORWARD LENGTH=582 SoyBaseE_val: 9.00E-105ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005351GO-mf Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity SoyBaseN/AISS
GO:0005366GO-mf Annotation by Michelle Graham. GO Molecular Function: myo-inositol:hydrogen symporter activity SoyBaseN/AISS
GO:0015144GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity SoyBaseN/AISS
GO:0022857GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity SoyBaseN/AISS
PTHR24063Panther FAMILY NOT NAMED JGI ISS
PTHR24063:SF85Panther SUBFAMILY NOT NAMED JGI ISS
PF00083PFAM Sugar (and other) transporter JGI ISS
UniRef100_G7IP93UniRef Annotation by Michelle Graham. Most informative UniRef hit: Inositol transporter n=1 Tax=Medicago truncatula RepID=G7IP93_MEDTR SoyBaseE_val: 3.00E-124ISS
UniRef100_UPI000233EDCAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EDCA related cluster n=1 Tax=unknown RepID=UPI000233EDCA SoyBaseE_val: 2.00E-178ISS

Expression Patterns of Glyma17g01156
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g01156 not represented in the dataset
Glyma17g01156 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g01156 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g007800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g01156
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g01156
>Glyma17g01156.1   sequence type=CDS   gene model=Glyma17g01156   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTAACAGGAGGCCAATTTCTGTCCTACCTTATCAATTTGGCATTCACCAGGGCACCTGGAACCAGGCGATGGATGCTTGGGGTGGCAGGAATTCCCGCTTTACTTGGGTTCATATTAATGTTGTCCCTCCCTGAGTCACCCAGATGGCTCTACATTAAGAAAGAGGAGGCAGAGGAGATCCTGTTGAGAATCTATCGGCCTAGCGAAATTGAAGAGGAGATGAGAGCGATGCAAGATTCGGTTGAGACTGAGAAGGAGGAAGAAGAGTTGAATGGGAAGTTGAGCTTAACGCAGAAACTAAAGGGTGCTTTTAAGAATGATGTAGTTCGAAGAGGTTCAAGTTGCTCAGCAGTTTGTGGGCATCAACACTCTCATGTATTACAGCCCAACCATTTTTCAGTTTGCTGGAATTGCCTCCAACTCCACAGCTCTTGCACTGTCTTGAGTATGGTTTTCATTGATAGATATGGAAGGAGAAGACTAATGCTCGTTTCCATGGCTTACCCAAATGCCCCTACTCTCTCTTCATGGAACTGCATGCAATGCTTACAGGCAGATTGTGCCAACAGTGATAATCAATTTCCTCCGGGAGCATGCTTGGCTGCAGAAAAGAGTGTAAGAGGTGTGTGCCGTGCAGCATATGCTCCTGGAATGGGAACAGTGCCTTGGGTTCTGAACTCAGAGATATACCCACTGAGATACAGAGGTCTTGGTGGAGGTATAGCTGCAGTTTCCAACTGGTGTGCTAATCTCATAATGAGTAACTCATTCTTAAGCATGACAGAGTCTTTAGGCGCGGCTGGCACATTCCTCCTCTTTGCTGGCTTCTCCTTGGTTCCAATCGTAGCAATCTATTTATTAGTGCCAGAAACCAAAGGCCTTCAGTTCGAGGAGGTTGAGAAGTTGCTTCAAGATGGCTTAGACCTTTCCCATTTGACAAGAAGAACAACGAAATCAAGAAAAAGGAGGATGACACCAAGTAATTAA
Predicted protein sequences of Glyma17g01156
>Glyma17g01156.1   sequence type=predicted peptide   gene model=Glyma17g01156   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLTGGQFLSYLINLAFTRAPGTRRWMLGVAGIPALLGFILMLSLPESPRWLYIKKEEAEEILLRIYRPSEIEEEMRAMQDSVETEKEEEELNGKLSLTQKLKGAFKNDVVRRGSSCSAVCGHQHSHVLQPNHFSVCWNCLQLHSSCTVLSMVFIDRYGRRRLMLVSMAYPNAPTLSSWNCMQCLQADCANSDNQFPPGACLAAEKSVRGVCRAAYAPGMGTVPWVLNSEIYPLRYRGLGGGIAAVSNWCANLIMSNSFLSMTESLGAAGTFLLFAGFSLVPIVAIYLLVPETKGLQFEEVEKLLQDGLDLSHLTRRTTKSRKRRMTPSN*






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