SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G55630 | AT | Annotation by Michelle Graham. TAIR10: Outward rectifying potassium channel protein | chr5:22531718-22532893 FORWARD LENGTH=363 | SoyBase | E_val: 1.00E-114 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0030007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular potassium ion homeostasis | SoyBase | N/A | ISS |
| GO:0051260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein homooligomerization | SoyBase | N/A | ISS |
| GO:0070838 | GO-bp | Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport | SoyBase | N/A | ISS |
| GO:0071805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ion channel activity | SoyBase | N/A | ISS |
| GO:0005267 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium channel activity | SoyBase | N/A | ISS |
| GO:0015269 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium-activated potassium channel activity | SoyBase | N/A | ISS |
| GO:0015271 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: outward rectifier potassium channel activity | SoyBase | N/A | ISS |
| KOG1418 | KOG | Tandem pore domain K+ channel | JGI | ISS | |
| PTHR11003 | Panther | POTASSIUM CHANNEL, SUBFAMILY K | JGI | ISS | |
| PTHR11003:SF5 | Panther | POTASSIUM CHANNEL PROTEIN | JGI | ISS | |
| PF07885 | PFAM | Ion channel | JGI | ISS | |
| UniRef100_G7JMW6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Outward rectifying potassium channel n=1 Tax=Medicago truncatula RepID=G7JMW6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MQY9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQY9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g01080 not represented in the dataset |
Glyma17g01080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g006800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g01080.1 sequence type=CDS gene model=Glyma17g01080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGGTGATGAGAGTCGAGAATCGTTGCTTTCAGAAGCAAGAGATCATTCTCATCTCAATGAGATAAGTGACCTCCAGAGGAGAAGGCCACGGCGTGGTAAATCTTCAGATAAAGAGAACAACCTCAAAGAAAAAAATGTGGTCCAAAACCCTTTACACTCTCAATATATAGATCCAAAACAAGAAGCAGAATTCCATTTCAAGACAGTGTTGTTGTGGCTAGCTGCATACCTAGGAGGAGGAACACTATGCTTCCTTCTCACAAGTCATCAGATCAAGGGCATTAAAACCAATGGGTTTCTTGATGCCATTTACTTCTGTGTTGTGACGATGACTACTGTTGGATATGGAGATCTTGTGCCAGATAGCCAATTGGCAAAACTTCTTGCATGCATTTATGTCTTCACAGGCATGGCTCTTGTAGGGTTAATTCTTAGCAAGGCAGCAGATTACATTGTTGAAAAGCAGGAAATATTTCTAGTTAGAACCTTATTCAAGGGTGAAAATTTTGGTCCAGAAGAGCTTTCCAAAGAGGTCGAAACTAACAAAGCAAAATACAAATTCATTCTCGCAGCATCCGTCTTTTTGGTGCTTATGATTTCAGGGACTATTTTTCTGCATTATATTGAAAATCTAGATTTTGTTGATGCCCTATATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCGACTACTATTGGCCGTGCTTTTGCTGTGTTCTGGATATTGAGCAGTACCATTTGCTTAGCTCAGTCTTTTGCTTATCTTGCTGAATTTTATACTGAAGAAAGACAGAAAGCAATGGCTAAAATAGTTCTTACACGAAAGTTGTCACTCCTTGATCTTGAGGCGGCTGATCTTGATGGAGACCATGTTGTCAGTGCCACAGAGTTCGTATTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTTTAGTTGTGATGGACATTTTTAGAAAACTAGATGTTGATAAATCAGGAACCCTGACAGAAGCTGATCTAAAATATTCTGAATCATCTAAACCATAG
>Glyma17g01080.1 sequence type=predicted peptide gene model=Glyma17g01080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGDESRESLLSEARDHSHLNEISDLQRRRPRRGKSSDKENNLKEKNVVQNPLHSQYIDPKQEAEFHFKTVLLWLAAYLGGGTLCFLLTSHQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSQLAKLLACIYVFTGMALVGLILSKAADYIVEKQEIFLVRTLFKGENFGPEELSKEVETNKAKYKFILAASVFLVLMISGTIFLHYIENLDFVDALYCVCSTVTTLGYGDKSFSTTIGRAFAVFWILSSTICLAQSFAYLAEFYTEERQKAMAKIVLTRKLSLLDLEAADLDGDHVVSATEFVLYKLKEMGKINQEDILVVMDIFRKLDVDKSGTLTEADLKYSESSKP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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