Report for Sequence Feature Glyma17g00990
Feature Type: gene_model
Chromosome: Gm17
Start: 554722
stop: 557359
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g00990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G16360 AT
Annotation by Michelle Graham. TAIR10: 5'-AMP-activated protein kinase beta-2 subunit protein | chr4:9245571-9246833 FORWARD LENGTH=261
SoyBase E_val: 5.00E-124 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004679 GO-mf
Annotation by Michelle Graham. GO Molecular Function: AMP-activated protein kinase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG1616
KOG
Protein involved in Snf1 protein kinase complex assembly
JGI ISS
PTHR10343 Panther
5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT
JGI ISS
PF04739 PFAM
5'-AMP-activated protein kinase beta subunit, interation domain
JGI ISS
UniRef100_Q7XYX7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AKIN beta2 n=1 Tax=Medicago truncatula RepID=Q7XYX7_MEDTR
SoyBase E_val: 1.00E-135 ISS
UniRef100_UPI0001B6414D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0001B6414D related cluster n=1 Tax=unknown RepID=UPI0001B6414D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g00990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g00990
Paralog Evidence Comments
Glyma07g39793 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g00990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g006000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g00990
Coding sequences of Glyma17g00990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g00990.1 sequence type=CDS gene model=Glyma17g00990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGCAATGTGAACGTGACTCCTGAAGAAGAAGAAGTTTCTGCAAGTGCAAGGGCAACCGATGAGAACGCCATGCCTCAGTCTCCTCCCACCTCTCCTACGGCTATCCATTTCCCCCTCATATTCGCTCCTCAGGTTCCGGTGGTTCCGCTACAAAGACCTGATGAGATGCATGTTCCAAGTTGTTCCTGGATGGAGACAACTTCAGGGTATGAAGATGTGTACCGCGAAGTAGGAATTCCAACAGTGATTACTTGGAGTTATGATGGAAAGGAAGTAGCTGTGGAGGGATCGTGGGATAATTGGAAAACAAGAATGCCCCTGGAGAGATCAGGGAAGGACTTTGCAATAATGAAGGTTCTGCCATCTGGTGTTTACCTGTACAGATTTATTGTGGATGGACGGATGAGGTACACTCCAGACTCGCCTTGGGCCCAAGATGATGCTGGGGATGCTTACAACATCTTGGACTTACAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAATCACCAGACTCGAGTTATGATAACTTATATCTTAGTTCTGAAGATTATGCTAAGGAGCCACCTTTAGTTCCTCCACTCTTGCAAATGACACTGCTAAATGTGCCTGCAACAAATATGAAAATCCAACCTCCTATGTCAAGACCTCGACATGGAGTGCTGAATCATCTTTACGCACAGAAAGGAAAGAGCAGTCCTTCAGTGGTTGGCCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACTGTTGTGCTGTACAAGTCGTTGCAAGGTAAACCATAA
Predicted protein sequences of Glyma17g00990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g00990.1 sequence type=predicted peptide gene model=Glyma17g00990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGNVNVTPEEEEVSASARATDENAMPQSPPTSPTAIHFPLIFAPQVPVVPLQRPDEMHVPSCSWMETTSGYEDVYREVGIPTVITWSYDGKEVAVEGSWDNWKTRMPLERSGKDFAIMKVLPSGVYLYRFIVDGRMRYTPDSPWAQDDAGDAYNILDLQDYVPEDIGSISSFEPPQSPDSSYDNLYLSSEDYAKEPPLVPPLLQMTLLNVPATNMKIQPPMSRPRHGVLNHLYAQKGKSSPSVVGLGTTHRFLAKYVTVVLYKSLQGKP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
