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Report for Sequence Feature Glyma17g00980

Feature Type:gene_model
Chromosome:Gm17
Start:549379
stop:551681
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g00980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47635AT Annotation by Michelle Graham. TAIR10: Pollen Ole e 1 allergen and extensin family protein | chr5:19307281-19307849 REVERSE LENGTH=164 SoyBaseE_val: 9.00E-33ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF01190PFAM Pollen proteins Ole e I like JGI ISS
UniRef100_C6T3E9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3E9_SOYBN SoyBaseE_val: 1.00E-126ISS
UniRef100_Q109X1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q109X1_ORYSJ SoyBaseE_val: 6.00E-28ISS

Expression Patterns of Glyma17g00980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g00980 not represented in the dataset
Glyma17g00980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00980
ParalogEvidenceComments
Glyma07g39806 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g005900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g00980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g00980
>Glyma17g00980.1   sequence type=CDS   gene model=Glyma17g00980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAACTACTTTTGCGGCTGCCACGGCCTTGTGATCATCTTGGTGCTAATTGCATCTCCGGCAGAAGGAGAGGACAACCACCCTTTGTTGGAGTTATTATCAAGTAGAGATGAAGTGGTGCAAATTGCTGGCTATGGAGAGGAGAAGCTTTCCACAGTCCTCATTACAGGCTCAGTTACTTGTGAGGCACCACACCGACCTCAACCTCATGCATGGCCAATACAAGGAGCTTCTGTTGGTGTGAACTGCAAGAGCCATGGCAGGAATAATAAGTGGAATAAGGGGAAGTCAATGGTAGCAACAGGTGTAACAGATGAATTTGGAGACTTTATGATCGACCTCCCTTCCCACCTTCATGCTATTCCTAACTTGGAAAAGGTGTGCATAGTGAAAATTCATCGGATTCCTAAGGCATCACTTTGTCGGCCAGCTCATGTGATCAAGAAACACAAGGGACTTACACTCTCTTCCTTTGGGAATGGCATCCGCACCTACAATGCAGGAAACATAAGGATCCAACATATATGA
Predicted protein sequences of Glyma17g00980
>Glyma17g00980.1   sequence type=predicted peptide   gene model=Glyma17g00980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNYFCGCHGLVIILVLIASPAEGEDNHPLLELLSSRDEVVQIAGYGEEKLSTVLITGSVTCEAPHRPQPHAWPIQGASVGVNCKSHGRNNKWNKGKSMVATGVTDEFGDFMIDLPSHLHAIPNLEKVCIVKIHRIPKASLCRPAHVIKKHKGLTLSSFGNGIRTYNAGNIRIQHI*






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