Glyma17g00900 - SoyBase

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Report for Sequence Feature Glyma17g00900

Feature Type:	gene_model
Chromosome:	Gm17
Start:	491066
stop:	493766
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g00900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12150	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) \| chr1:4123530-4125328 REVERSE LENGTH=548	SoyBase	E_val: 3.00E-119	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05701	PFAM	Plant protein of unknown function (DUF827)	JGI		ISS
UniRef100_Q2HV31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prefoldin n=1 Tax=Medicago truncatula RepID=Q2HV31_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EDC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EDC3 related cluster n=1 Tax=unknown RepID=UPI000233EDC3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g00900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00900

Paralog	Evidence	Comments
Glyma07g39880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g005200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g00900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g00900

Limit To All Plant Sequences

>Glyma17g00900.1   sequence type=CDS   gene model=Glyma17g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGCCACAAAAAGTTGAATTCTCCAAGGGGAGAGGTTGGAGAGATAGACACTAGGGCACCATTCCAATCTGTCAAAGCTGCTGTTAGTTTATTTGGCGAAGTAGCCATCACTAGAGACAGATTTTCTGTCAAGAGAAGATCATCAGAGAATGTATTTGAAAAGGAGACGCAGCTTATCTTGGCCCAAAAGGAATTAAACAAGATAAAGAAACAGGTGGATAATGCTGAGGCCATCAAAGCCAAAGCACTTTCTGAGCTTGAGAATGCCAAGGAGATCCTTCAGAGTTTGACAAGCAAGCTGGCCAACGTGAGAGAATGCAAACAATCTGCAATGCAAGCAGCTGAATTGGTGAGGAACCAGAGCAAGCGATTTGAAAAGACACTATCGCTAAAAGCCGTGGGATATGAAGCTTGGAGAAAAGAACTAGAACATGCAAGAAAAGCGTACACTACGACTATAACTGAACTAGATTCTTCCAAGCAAGAACTCACCAAAATAAGGCAGGATTTTGATGCAGTTTTGGAGGCAAAGCTGGCAGCACTTCAAGCAGCAGGAGAGGCTCAGCGTTCAGCAAAATTAAACTCGGAAAGAATCAGTGAACTCTCAAATGAAATTGCAACCATGAAAGCATCAATTGAACAAGTGAGACTTGCCTCTGAACAATCCCAAGAAGAAAGTGAAGCCCAACTTGTTGGTTATTACAAAACTGCCAAGGAAGAAGCACAGAAAAACTTGGAGTCCTTAAAGAATGAATACGACACTGAACTCATGCAAAGTCTAGATGCCAAACTTGCTCAAACAAGTGCTGAGATTGAGTTTCTTCAAGAGCAGATTAAGAAGCTGCATGCTTCTAAGATGGATTCTGTGAGGCTTCTAACTTCAGAGCTTAAAGAAGCCACAAAGACACTTGAGGAGGTTGCTGAAGAAAAGAACTCCCTTAAGAAACTGGTGTTTTCTCTTAGGACAGAATTAAAGCAAGTTAAGAAGGAGCAAGATGAAGTGAAGGAGAAGGGACATATAGCAGAAGCTCTTGCTGCTAACCTCACTGGTAAACTACAAGGGAGCATGAGAGATGCAAGGCCTAAGCCAGGCACTGTTGATGACTTAGAAGCAAATATGTTCTATGTGCAGAGTGCGAAGATTCGGAAGCTACAATTGGAAACTGAAGGTGCAATAAGAGAAGCAGAAGAGACGAGGAGAAAAGTTCAAGAGCTGAAGCAAGAAGTTGAAAAATCAAGGGCTGTGGCTGAAGAAGCAGAGGAAAAACTTGAGCTCGTTCTGGTGGAGGCTAAAGAGGCAAAAGCAGCAGAACAAAGAGCCGTTAAAGAGATGAAGATTTTGTCTGAAGTGGGTAGAGTCCCGTACTCAAAATTCAATGGCAAGATCAAGATGTCAAATGAAGAGTTTGAGGCACTGAGAGCAAAGGCCAAGGAGTGTGAGGATTTGGTTGAAAAGAAAGAGGCAATTGTGATGGCAGAGCTGCAGGAAATCTATGCAAGAAAGAATGAAGTGGACAGAAAGGTGGAAACTAATCTGAAGGCAATTGAGGAAACAAAGGCTGCAGAGGAGACGGCTTTGTGGAGTGCAGAGATGGCAGATTCTGCAAAAGTGGCAATTGAAAGTGAACTGAGGAGGTGGCATCAACAACAACAAAAGGTGATACCAGGTGCTGCTTCTCAGAAATTGGAGCATTCTGCAGCACCAATCTTGACCATCTAG

Predicted protein sequences of Glyma17g00900

Limit To All Plant Sequences

>Glyma17g00900.1   sequence type=predicted peptide   gene model=Glyma17g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGHKKLNSPRGEVGEIDTRAPFQSVKAAVSLFGEVAITRDRFSVKRRSSENVFEKETQLILAQKELNKIKKQVDNAEAIKAKALSELENAKEILQSLTSKLANVRECKQSAMQAAELVRNQSKRFEKTLSLKAVGYEAWRKELEHARKAYTTTITELDSSKQELTKIRQDFDAVLEAKLAALQAAGEAQRSAKLNSERISELSNEIATMKASIEQVRLASEQSQEESEAQLVGYYKTAKEEAQKNLESLKNEYDTELMQSLDAKLAQTSAEIEFLQEQIKKLHASKMDSVRLLTSELKEATKTLEEVAEEKNSLKKLVFSLRTELKQVKKEQDEVKEKGHIAEALAANLTGKLQGSMRDARPKPGTVDDLEANMFYVQSAKIRKLQLETEGAIREAEETRRKVQELKQEVEKSRAVAEEAEEKLELVLVEAKEAKAAEQRAVKEMKILSEVGRVPYSKFNGKIKMSNEEFEALRAKAKECEDLVEKKEAIVMAELQEIYARKNEVDRKVETNLKAIEETKAAEETALWSAEMADSAKVAIESELRRWHQQQQKVIPGAASQKLEHSAAPILTI*

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