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Report for Sequence Feature Glyma17g00870

Feature Type:gene_model
Chromosome:Gm17
Start:475764
stop:477185
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g00870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47740AT Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:19338688-19339683 FORWARD LENGTH=244 SoyBaseE_val: 4.00E-36ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G7ZZT9UniRef Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ZZT9_MEDTR SoyBaseE_val: 9.00E-88ISS
UniRef100_I1MQW7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQW7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g00870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00870
ParalogEvidenceComments
Glyma07g39900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g004900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g00870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g00870
>Glyma17g00870.1   sequence type=CDS   gene model=Glyma17g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACGATGAGTACATCAGTTGTGGCGGTTTTATTGGGTTCAAGAGAAACCAAGTGATAGGAGATTCAGATTCAGAGGAGTTGTTTGAGATAAATCTGAAGAAGCCTTTGGATGCAATATTAAGAGAAGACTGCGAGAGCATTCTGTTCTCTCTTGATATTGACAACGGCGTCGGCAATGATGGTGGTGATGATGTTGTTTATGTGGCAGTAGGCAACGATGGAGATTCGAGCACGGAGGCTCTTTCATGGGCCTCGAAGCACGCCATGACACCCTCTGCCACCCTCATTCCAAGTCCATTGGGAAAAATTCCAAGGAGCCACGTAAATCTAGAGAATGTTAACATGCACTTGACACAAGAGAAAGGCAAGAGAAAATTGCTCCTTCAAAAGTTCATTGATCTCTGCGTTGATTCGAAAGTTAAGGTGGAGATGAAGCTCATTGAAGGTGACAATGCTGCCAGAGCCATCGTGGACCTTGTCGAAAATCTTAATATAAGGAAATTGGTTATTGGAATTACTCAATCTAATTTAAGGAACCGTGTCCGCGATCCATATATAAAATCTGGGTCTAGAAGTCAAAATTCCATAGCGGCCAAGGTATTAAAAACTGCACAGGGTAGCTGTGACATAAAAATCATATGCGAAGGAAGAGAAGTGATCGACCAGATGATGAGTGATTGCACTTCACCACGCTCCGGCTCCATGGACGTCAAAGGGAGTTCGAGAGTTTCACAGCAAAAAAATGAATCCCGTGGATTTGTCCTTTTAAGCATTTTATGTCCAGTTTATGGTTATTTAGGTCCATCACCAGGATGA
Predicted protein sequences of Glyma17g00870
>Glyma17g00870.1   sequence type=predicted peptide   gene model=Glyma17g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHDEYISCGGFIGFKRNQVIGDSDSEELFEINLKKPLDAILREDCESILFSLDIDNGVGNDGGDDVVYVAVGNDGDSSTEALSWASKHAMTPSATLIPSPLGKIPRSHVNLENVNMHLTQEKGKRKLLLQKFIDLCVDSKVKVEMKLIEGDNAARAIVDLVENLNIRKLVIGITQSNLRNRVRDPYIKSGSRSQNSIAAKVLKTAQGSCDIKIICEGREVIDQMMSDCTSPRSGSMDVKGSSRVSQQKNESRGFVLLSILCPVYGYLGPSPG*






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