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Report for Sequence Feature Glyma17g00830

Feature Type:gene_model
Chromosome:Gm17
Start:437999
stop:444801
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g00830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26570AT Annotation by Michelle Graham. TAIR10: calcineurin B-like 3 | chr4:13408608-13409998 REVERSE LENGTH=226 SoyBaseE_val: 4.00E-147ISS
GO:0005513GO-bp Annotation by Michelle Graham. GO Biological Process: detection of calcium ion SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0055075GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion homeostasis SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009705GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0034 KOG Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein JGI ISS
PTHR23056Panther CALCINEURIN B JGI ISS
PTHR23056:SF3Panther CALCINEURIN B JGI ISS
UniRef100_B0I559UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin B-like protein n=1 Tax=Phaseolus vulgaris RepID=B0I559_PHAVU SoyBaseE_val: 3.00E-162ISS
UniRef100_I1MQW3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQW3_SOYBN SoyBaseE_val: 6.00E-164ISS

Expression Patterns of Glyma17g00830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00830
ParalogEvidenceComments
Glyma07g39936 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g004400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g00830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g00830
>Glyma17g00830.3   sequence type=transcript   gene model=Glyma17g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAAACATGAAATATGGTTCTTTCAATCTAATTAATTATTGTCATTTATGCCATTCTTTCCATAAATATAAATATAATAATTAATTCAGTCAGTTTTGTTATTTTGGGTTGGACAGAACAATCACAGGATTGTTCATTTTTGCAGCCATTTCAGCGTATAAAAACCAAAAACCCACCCACCTTGCATGTTTGCTTGTTCCTAAATTACAATTTTCAAAGCCAGACAGACAAACATGTCCGAGAATATTGAGTCCAATTCTCCTTCGCTTTCCCTCTTTATCTGAAAGGTATGGAGTGTTTTGACTTCTGGAAGAGATAATGGTGCAGTGCCTAGACGGATTAAAGCATTTGTGTGCTGCTCTGGTAAATTGTTGTGATGCCGATTCGTCAAAGCAACCTACAGGTTTAGAAAATCCAGAAGTTCTTGCAAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCGCTATATGAATTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGACGGACTAATTAATAAGGAAGAATTTCAGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGGGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAGGAGGTAAAACAAATGGTAGTGGCCACTCTAGCCGAATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAAGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGATACTTGAGGCAAACTACAGCATCCATGTCAGTTTCAGTGTTCTTGACTGGGAATGGTCTTCGATTGACTTGTGAATGATGACCGGGTTCTATGTGAAGGATTCGGTACGGGGTGGATATGGAGTTTATTTATATTTTCATTACAAGTAGAACTTTGTCTTCCCGTTTTTGGATGGATGAGGTTTGTAGATTGAACAAATGGGTTTGATTATTTATTTATTTGCTTCATTTGAGAATAAAAGGGGGAACAAAATAGAATATTCAGGCATTTCAGCATTAGCACTTTGGAATTAATTTTGGTGAGAAATATGTTTACCATAAGTCTTGTGCAATTGCTTCAGCAATCTGTGAAGAGTTCTTTGAGCACATGCCCTGGGTTGAGAATTGCTGCTCCAAAAAACTTAAGTGCATGTCAGTTGTTGTGCTTAAAGCCAACTCTAGCTTTCCTCCTTGACAGAAAGATAATGCCCCTCTCTATCCAATTTATTTCACTCTTATATTTGCCATTATTTTTGGCTAGGCTATTGATGATTAAAAATCAATTAGCAGCGTATGTTTTCTTGTAATTACATTTTTTTGCAAGGGTATGTATTTGAGAAATTAATTGAAAACAATATTTTATGAGTGCCTAAAATCACACGGAG
Coding sequences of Glyma17g00830
>Glyma17g00830.2   sequence type=CDS   gene model=Glyma17g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCAGTGCCTAGACGGATTAAAGCATTTGTGTGCTGCTCTGGTAAATTGTTGTGATGCCGATTCGTCAAAGCAACCTACAGGTTTAGAAAATCCAGAAGTTCTTGCAAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCGCTATATGAATTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGACGGACTAATTAATAAGGAAGAATTTCAGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGGGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAGGAGGTAAAACAAATGGTAGTGGCCACTCTAGCCGAATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAAGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGATACTTGA

>Glyma17g00830.3   sequence type=CDS   gene model=Glyma17g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCAGTGCCTAGACGGATTAAAGCATTTGTGTGCTGCTCTGGTAAATTGTTGTGATGCCGATTCGTCAAAGCAACCTACAGGTTTAGAAAATCCAGAAGTTCTTGCAAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCGCTATATGAATTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGACGGACTAATTAATAAGGAAGAATTTCAGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGGGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAGGAGGTAAAACAAATGGTAGTGGCCACTCTAGCCGAATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAAGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGATACTTGA
Predicted protein sequences of Glyma17g00830
>Glyma17g00830.2   sequence type=predicted peptide   gene model=Glyma17g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQCLDGLKHLCAALVNCCDADSSKQPTGLENPEVLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT*

>Glyma17g00830.3   sequence type=predicted peptide   gene model=Glyma17g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQCLDGLKHLCAALVNCCDADSSKQPTGLENPEVLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT*






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