Glyma17g00700 - SoyBase

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Report for Sequence Feature Glyma17g00700

Feature Type:	gene_model
Chromosome:	Gm17
Start:	366788
stop:	371336
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g00700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02380	AT	Annotation by Michelle Graham. TAIR10: glutathione S-transferase (class zeta) 2 \| chr2:626878-628569 FORWARD LENGTH=223	SoyBase	E_val: 2.00E-97	ISS
GO:0009072	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004364	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity	SoyBase	N/A	ISS
KOG0868	KOG	Glutathione S-transferase	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF24	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_Q9FQD3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase GST 25 n=1 Tax=Glycine max RepID=Q9FQD3_SOYBN	SoyBase	E_val: 2.00E-160	ISS
UniRef100_Q9FQD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glutathione S-transferase GST 25 n=1 Tax=Glycine max RepID=Q9FQD3_SOYBN	SoyBase	E_val: 2.00E-160	ISS

Expression Patterns of Glyma17g00700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g00700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g003300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g00700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g00700

Limit To All Plant Sequences

>Glyma17g00700.4   sequence type=transcript   gene model=Glyma17g00700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTTTAAAATCCTAATCGAATAAGCGTATTTTATTTTAATCGTCGGCGGGTGATTTTGTCTTGACCTTATAGATAACTCCTAACTGGAGAGTCCAGGGTGTTGGAAGGATCAGCACGACACTGAGCATCAGCAATGGCAAGCGCAAGTGTTGGTAAAGAACTGACGCTGTATTCGTATTGGAGGAGCTCTTGTTCCCACCGAGTCCGAATCGCTCTCAACCTCAAAGGGCTTAAATACGAATACAAGCCCGTCAATCTGCTCAAGGGAGAACAATCTCGCCCTGAGTTTCTCCAGCTCAATCCTGTTGGTTGTGTCCCCGTTCTAGTGGATGACCACGTTGTTCTCTATGACTCTTTCGCCATTATTATGTATTTGGAAGATAAGTATCCTCACAATCCTTTGCTCCCTCATGATATTTACAAGAGAGCAATCAATTTCCAGGCTGCTAGTGTTGTTTCCTCAACAATACAACCTCTTCATAACTTGAGTTTACTGAACTACATTGGGGAGAAAGTTGGCCCTGATGAAAAACTTCCTTGGGCCCAAAGTATAATTAGAAGAGGCTTTAAAGCACTGGAAAAGCTATTGAAAGACCACACAGGAAGATATGCAACTGGAGATGAAGTTTTCCTGGCAGATATATTTTTAGCACCTCAGTTACATGCAGCATTTAAGAGATTCAACATTCACATGAACGAGTTCCCTATTCTAGCAAGATTGCATGAGACATATAATGAGATCCCTGCATTCCAGGAGGCTCTGCCAGAGAACCAGCCTGATGCAGTACACTAGTTGAACCAATAATTTGGGACAGAAATATGAGTTGATATTAAGTTGGAGAAATTGCAGCAGGAGCTACTTATTCAGCATCCGGATGAATTCGTTGTTAAAGTATTAAAATATGATACTCAATATAGCAATAAGGTTGCCACATGCAATATTTATTGCACACATCATGTACAATTGAAAAAAAAAAAAATTGGTTTCGGGTGTATGTCTATAAAGCCTTATGTTTATTTTCCATTTCATATTCTTCCCAGAATCCCAGTCAATGTAGCTTGATGGATGATTCTTAATGGTGTTTATGGTTGAATTGGTGTTTCAAAAAGTTCATTTGAGTTTATGATGATGATTTTTGTAACATTGAACTAATTTTAAGACTCACCTTGCGAGCTCGAGTCTTGAGATCATGTTCACCATTTTCTCCAACCTCAGACTAGGGTGAAGTCCTTTACCATGCATTAGATTGAGAGATCATCCTCATGTTCTGAGGACGAGGAACACAA

Coding sequences of Glyma17g00700

Limit To All Plant Sequences

>Glyma17g00700.3   sequence type=CDS   gene model=Glyma17g00700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGCGCAAGTGTTGGTAAAGAACTGACGCTGTATTCGTATTGGAGGAGCTCTTGTTCCCACCGAGTCCGAATCGCTCTCAACCTCAAAGGGCTTAAATACGAATACAAGCCCGTCAATCTGCTCAAGGGAGAACAATCTCGCCCTGAGTTTCTCCAGCTCAATCCTGTTGGTTGTGTCCCCGTTCTAGTGGATGACCACGTTGTTCTCTATGACTCTTTCGCCATTATTATGTATTTGGAAGATAAGTATCCTCACAATCCTTTGCTCCCTCATGATATTTACAAGAGAGCAATCAATTTCCAGGCTGCTAGTGTTGTTTCCTCAACAATACAACCTCTTCATAACTTGAGTTTACTGAACTACATTGGGGAGAAAGTTGGCCCTGATGAAAAACTTCCTTGGGCCCAAAGTATAATTAGAAGAGGCTTTAAAGCACTGGAAAAGCTATTGAAAGACCACACAGGAAGATATGCAACTGGAGATGAAGTTTTCCTGGCAGATATATTTTTAGCACCTCAGTTACATGCAGCATTTAAGAGATTCAACATTCACATGAACGAGTTCCCTATTCTAGCAAGATTGCATGAGACATATAATGAGATCCCTGCATTCCAGGAGGCTCTGCCAGAGAACCAGCCTGATGCAGTACACTAG

>Glyma17g00700.4   sequence type=CDS   gene model=Glyma17g00700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGCGCAAGTGTTGGTAAAGAACTGACGCTGTATTCGTATTGGAGGAGCTCTTGTTCCCACCGAGTCCGAATCGCTCTCAACCTCAAAGGGCTTAAATACGAATACAAGCCCGTCAATCTGCTCAAGGGAGAACAATCTCGCCCTGAGTTTCTCCAGCTCAATCCTGTTGGTTGTGTCCCCGTTCTAGTGGATGACCACGTTGTTCTCTATGACTCTTTCGCCATTATTATGTATTTGGAAGATAAGTATCCTCACAATCCTTTGCTCCCTCATGATATTTACAAGAGAGCAATCAATTTCCAGGCTGCTAGTGTTGTTTCCTCAACAATACAACCTCTTCATAACTTGAGTTTACTGAACTACATTGGGGAGAAAGTTGGCCCTGATGAAAAACTTCCTTGGGCCCAAAGTATAATTAGAAGAGGCTTTAAAGCACTGGAAAAGCTATTGAAAGACCACACAGGAAGATATGCAACTGGAGATGAAGTTTTCCTGGCAGATATATTTTTAGCACCTCAGTTACATGCAGCATTTAAGAGATTCAACATTCACATGAACGAGTTCCCTATTCTAGCAAGATTGCATGAGACATATAATGAGATCCCTGCATTCCAGGAGGCTCTGCCAGAGAACCAGCCTGATGCAGTACACTAG

Predicted protein sequences of Glyma17g00700

Limit To All Plant Sequences

>Glyma17g00700.3   sequence type=predicted peptide   gene model=Glyma17g00700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASVGKELTLYSYWRSSCSHRVRIALNLKGLKYEYKPVNLLKGEQSRPEFLQLNPVGCVPVLVDDHVVLYDSFAIIMYLEDKYPHNPLLPHDIYKRAINFQAASVVSSTIQPLHNLSLLNYIGEKVGPDEKLPWAQSIIRRGFKALEKLLKDHTGRYATGDEVFLADIFLAPQLHAAFKRFNIHMNEFPILARLHETYNEIPAFQEALPENQPDAVH*

>Glyma17g00700.4   sequence type=predicted peptide   gene model=Glyma17g00700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASVGKELTLYSYWRSSCSHRVRIALNLKGLKYEYKPVNLLKGEQSRPEFLQLNPVGCVPVLVDDHVVLYDSFAIIMYLEDKYPHNPLLPHDIYKRAINFQAASVVSSTIQPLHNLSLLNYIGEKVGPDEKLPWAQSIIRRGFKALEKLLKDHTGRYATGDEVFLADIFLAPQLHAAFKRFNIHMNEFPILARLHETYNEIPAFQEALPENQPDAVH*

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