Glyma17g00670 - SoyBase

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Report for Sequence Feature Glyma17g00670

Feature Type:	gene_model
Chromosome:	Gm17
Start:	349533
stop:	352015
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g00670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49800	AT	Annotation by Michelle Graham. TAIR10: Polyketide cyclase/dehydrase and lipid transport superfamily protein \| chr5:20234771-20236135 REVERSE LENGTH=242	SoyBase	E_val: 1.00E-123	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2761	KOG	START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer	JGI		ISS
PF01852	PFAM	START domain	JGI		ISS
UniRef100_I1MQU6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQU6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q53NA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q53NA1_ORYSJ	SoyBase	E_val: 4.00E-94	ISS

Expression Patterns of Glyma17g00670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00670

Paralog	Evidence	Comments
Glyma07g40120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g003000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g00670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g00670

Limit To All Plant Sequences

>Glyma17g00670.2   sequence type=transcript   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGAAATAATAATAGAATGGGAAGTTAGTTGTTGGTACTACACCTAACGTTACGCTAAGGACAATCCCAAATACCGTGCCAAAGAGTTCATTGGGACCGGTTCTGCCTGCCTTGCTGTTTGAAATGCAATCCAGCTCTATCAACTATCATGGCACGTGACTGGGGCCTCAGAATTCGAAAGTGGTAGGGATTGTCTTTTGGAGAAGAATATAATATAATACACCTTTTTTGTTCACTAACCATACACCATAATATTATGAATATGTCTTTCTAGCTCCAAAATTCCTATGCATGATGGTATTGCTCTCTAATCCTATATTCTTTATTTGCTTTGCTATATATCTGTGGATGAAATGAAATTCTTGTATTTTTCTTTTCCAATGTTTTGTTCCTCTCCCAAAAGCACCAACACTCCATGTGCATCATATTTTCTACCCTTGTTCTTGCTGCTTTTTTGGAAGAAAAAAGAATCTATCTTTTATATAGAGAGAGGGTTATTGCTCTAATCATGTAAGGTTCTTCTGGCACTGCATGTGCAGCAATCACCTCTGCCCACTTCATATTATTTTGCACTTCTCAACCTCTCTTTGAACCACTCATATCATCACACAGCCCTCTCACCCTTTTACATATATATACACATGTATACATATATGTATGTACCTTCCAATCTACCAAGTGTTTTATTGTCTTAAAGAATTCAACACCTGCAGGCAATTGATACCCTCATGCCAGCCACAATGAGCAGCAGTCCTGCACCTTGCAGCCGATCCTGGTCAATTAGTGAGGACTCCCTAAGAAGGTATGTGCAGTTTGCGAGTGAAAGCTGCATACAAGAGTTATTGGCAGCTTCGGTCACAAACAAAGGAAATGGCAACGATGGATGGAAGGTGCTAACTCTTGAAAATGGAGTGGAGATATCAAAACGAAGGTCAGACTCACTCCACACGTTTCGCAGCCGTTGGGTTCTTAGATCTGTCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCTTCAGGAATAGAGAATTCATTGTCTATGAGCGGCGTGAGACTATGGAAGATGGCACCTTGGTGGTAGCAGTTGCTTCACTGCCAAAGGAAATAGCTGCAGGGTTACATCCGAAGCAAAGTAATGCAATCAGAGGACTGTTGCTACAGTCAGGGTGGGTGGTAGAGAAGCTTGAAGATGATTCATGTGTGGTCACTTATGTTGTTCAGTTGGATCCTGCAGGATGGCTGCCCAAGTGCTTTGTCAATCGATTTAACACAAAACTGGTTATGATCATTGAAAACCTTAAAAAATTAGCCCAAGCATGTCCTAGTGAAGGTGAAATTTGATTACTTTGTAAAGTTTGAGAGAAAGCGATCGAGTGTAACCAAGTATAGTATTAATGCCCATCATTGATATTTACTTACTATAAATATAATTAATTTCGGCATTCAAGATAAAGATTTAAATTTCTACTT

>Glyma17g00670.3   sequence type=transcript   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAGTGTTTTATTGTCTTAAAGAATTCAACACCTGCAGGCAATTGATACCCTCATGCCAGCCACAATGAGCAGCAGTCCTGCACCTTGCAGCCGATCCTGGTGAATACCAAAACCAAACTAATTAAGCATTTTGATTTCTCATGAGAAGTATTTGTTTTAGAGAGCGACCTAGTAGGAGACTTGGTGTTAGACAGTTTTGTACGTTCAATCTTATTATGAATTTTGTTTGGTATAGAACTTAATAAAACCCTCCCCATGATTTTGTTAAAAAGGTCAATTAGTGAGGACTCCCTAAGAAGGTATGTGCAGTTTGCGAGTGAAAGCTGCATACAAGAGTTATTGGCAGCTTCGGTCACAAACAAAGGAAATGGCAACGATGGATGGAAGGTGCTAACTCTTGAAAATGGAGTGGAGATATCAAAACGAAGGTCAGACTCACTCCACACGTTTCGCAGCCGTTGGGTTCTTAGATCTGTCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCTTCAGGAATAGAGAATTCATTGTCTATGAGCGGCGTGAGACTATGGAAGATGGCACCTTGGTGGTAGCAGTTGCTTCACTGCCAAAGGAAATAGCTGCAGGGTTACATCCGAAGCAAAGTAATGCAATCAGAGGACTGTTGCTACAGTCAGGGTGGGTGGTAGAGAAGCTTGAAGATGATTCATGTGTGGTCACTTATGTTGTTCAGTTGGATCCTGCAGGATGGCTGCCCAAGTGCTTTGTCAATCGATTTAACACAAAACTGGTTATGATCATTGAAAACCTTAAAAAATTAGCCCAAGCATGTCCTAGTGAAGGTGAAATTTGATTACTTTGTAAAGTTTGAGAGAAAGCGATCGAGTGTAACCAAGTATAGTATTAATGCCCATCATTGATATTTACTTACTATAAATATAATTAATTTCGGCATTCAAGATAAAGATTTAAATTTCTACTT

>Glyma17g00670.4   sequence type=transcript   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAGTGTTTTATTGTCTTAAAGAATTCAACACCTGCAGGCAATTGATACCCTCATGCCAGCCACAATGAGCAGCAGTCCTGCACCTTGCAGCCGATCCTGGTGAATACCAAAACCAAACTAATTAAGCATTTTGATTTCTCATGAGAAGTATTTGTTTTAGAGAGCGACCTAGTAGGAGACTTGGTGTTAGACAGTTTTGTACGTTCAATCTTATTATGAATTTTGTTTGGTATAGAACTTAATAAAACCCTCCCCATGATTTTGTTAAAAAGGTCAATTAGTGAGGACTCCCTAAGAAGGTATGTGCAGTTTGCGAGTGAAAGCTGCATACAAGAGTTATTGGCAGCTTCGGTCACAAACAAAGGAAATGGCAACGATGGATGGAAGGTGCTAACTCTTGAAAATGGAGTGGAGATATCAAAACGAAGGTCAGACTCACTCCACACGTTTCGCAGCCGTTGGGTTCTTAGATCTGTCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGCCAGCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCTTCAGGAATAGAGAATTCATTGTCTATGAGCGGCGTGAGACTATGGAAGATGGCACCTTGGTGGTAGCAGTTGCTTCACTGCCAAAGGAAATAGCTGCAGGGTTACATCCGAAGCAAAGTAATGCAATCAGAGGACTGTTGCTACAGTCAGGGTGGGTGGTAGAGAAGCTTGAAGATGATTCATGTGTGGTCACTTATGTTGTTCAGTTGGATCCTGCAGGATGGCTGCCCAAGTGCTTTGTCAATCGATTTAACACAAAACTGGTTATGATCATTGAAAACCTTAAAAAATTAGCCCAAGCATGTCCTAGTGAAGGTGAAATTTGATTACTTTGTAAAGTTTGAGAGAAAGCGATCGAGTGTAACCAAGTATAGTATTAATGCCCATCATTGATATTTACTTACTATAAATATAATTAATTTCGGCATTCAAGATAAAGATTTAAATTTCTACTT

Coding sequences of Glyma17g00670

Limit To All Plant Sequences

>Glyma17g00670.1   sequence type=CDS   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCAATTGATACCCTCATGCCAGCCACAATGAGCAGCAGTCCTGCACCTTGCAGCCGATCCTGGTCAATTAGTGAGGACTCCCTAAGAAGGTATGTGCAGTTTGCGAGTGAAAGCTGCATACAAGAGTTATTGGCAGCTTCGGTCACAAACAAAGGAAATGGCAACGATGGATGGAAGGTGCTAACTCTTGAAAATGGAGTGGAGATATCAAAACGAAGGTCAGACTCACTCCACACGTTTCGCAGCCGTTGGGTTCTTAGATCTGTCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCTTCAGGAATAGAGAATTCATTGTCTATGAGCGGCGTGAGACTATGGAAGATGGCACCTTGGTGGTAGCAGTTGCTTCACTGCCAAAGGAAATAGCTGCAGGGTTACATCCGAAGCAAAGTAATGCAATCAGAGGACTGTTGCTACAGTCAGGGTGGGTGGTAGAGAAGCTTGAAGATGATTCATGTGTGGTCACTTATGTTGTTCAGTTGGATCCTGCAGGATGGCTGCCCAAGTGCTTTGTCAATCGATTTAACACAAAACTGGTTATGATCATTGAAAACCTTAAAAAATTAGCCCAAGCATGTCCTAGTGAAGGTGAAATTTGA

>Glyma17g00670.2   sequence type=CDS   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGCCACAATGAGCAGCAGTCCTGCACCTTGCAGCCGATCCTGGTCAATTAGTGAGGACTCCCTAAGAAGGTATGTGCAGTTTGCGAGTGAAAGCTGCATACAAGAGTTATTGGCAGCTTCGGTCACAAACAAAGGAAATGGCAACGATGGATGGAAGGTGCTAACTCTTGAAAATGGAGTGGAGATATCAAAACGAAGGTCAGACTCACTCCACACGTTTCGCAGCCGTTGGGTTCTTAGATCTGTCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCTTCAGGAATAGAGAATTCATTGTCTATGAGCGGCGTGAGACTATGGAAGATGGCACCTTGGTGGTAGCAGTTGCTTCACTGCCAAAGGAAATAGCTGCAGGGTTACATCCGAAGCAAAGTAATGCAATCAGAGGACTGTTGCTACAGTCAGGGTGGGTGGTAGAGAAGCTTGAAGATGATTCATGTGTGGTCACTTATGTTGTTCAGTTGGATCCTGCAGGATGGCTGCCCAAGTGCTTTGTCAATCGATTTAACACAAAACTGGTTATGATCATTGAAAACCTTAAAAAATTAGCCCAAGCATGTCCTAGTGAAGGTGAAATTTGA

>Glyma17g00670.3   sequence type=CDS   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTTGTTAAAAAGGTCAATTAGTGAGGACTCCCTAAGAAGGTATGTGCAGTTTGCGAGTGAAAGCTGCATACAAGAGTTATTGGCAGCTTCGGTCACAAACAAAGGAAATGGCAACGATGGATGGAAGGTGCTAACTCTTGAAAATGGAGTGGAGATATCAAAACGAAGGTCAGACTCACTCCACACGTTTCGCAGCCGTTGGGTTCTTAGATCTGTCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCTTCAGGAATAGAGAATTCATTGTCTATGAGCGGCGTGAGACTATGGAAGATGGCACCTTGGTGGTAGCAGTTGCTTCACTGCCAAAGGAAATAGCTGCAGGGTTACATCCGAAGCAAAGTAATGCAATCAGAGGACTGTTGCTACAGTCAGGGTGGGTGGTAGAGAAGCTTGAAGATGATTCATGTGTGGTCACTTATGTTGTTCAGTTGGATCCTGCAGGATGGCTGCCCAAGTGCTTTGTCAATCGATTTAACACAAAACTGGTTATGATCATTGAAAACCTTAAAAAATTAGCCCAAGCATGTCCTAGTGAAGGTGAAATTTGA

>Glyma17g00670.4   sequence type=CDS   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGAGATATCAAAACGAAGGTCAGACTCACTCCACACGTTTCGCAGCCGTTGGGTTCTTAGATCTGTCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGCCAGCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCTTCAGGAATAGAGAATTCATTGTCTATGAGCGGCGTGAGACTATGGAAGATGGCACCTTGGTGGTAGCAGTTGCTTCACTGCCAAAGGAAATAGCTGCAGGGTTACATCCGAAGCAAAGTAATGCAATCAGAGGACTGTTGCTACAGTCAGGGTGGGTGGTAGAGAAGCTTGAAGATGATTCATGTGTGGTCACTTATGTTGTTCAGTTGGATCCTGCAGGATGGCTGCCCAAGTGCTTTGTCAATCGATTTAACACAAAACTGGTTATGATCATTGAAAACCTTAAAAAATTAGCCCAAGCATGTCCTAGTGAAGGTGAAATTTGA

Predicted protein sequences of Glyma17g00670

Limit To All Plant Sequences

>Glyma17g00670.1   sequence type=predicted peptide   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMAIDTLMPATMSSSPAPCSRSWSISEDSLRRYVQFASESCIQELLAASVTNKGNGNDGWKVLTLENGVEISKRRSDSLHTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIKDLEDNLSIIRLRFGDNSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQSNAIRGLLLQSGWVVEKLEDDSCVVTYVVQLDPAGWLPKCFVNRFNTKLVMIIENLKKLAQACPSEGEI*

>Glyma17g00670.2   sequence type=predicted peptide   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPATMSSSPAPCSRSWSISEDSLRRYVQFASESCIQELLAASVTNKGNGNDGWKVLTLENGVEISKRRSDSLHTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIKDLEDNLSIIRLRFGDNSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQSNAIRGLLLQSGWVVEKLEDDSCVVTYVVQLDPAGWLPKCFVNRFNTKLVMIIENLKKLAQACPSEGEI*

>Glyma17g00670.3   sequence type=predicted peptide   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILLKRSISEDSLRRYVQFASESCIQELLAASVTNKGNGNDGWKVLTLENGVEISKRRSDSLHTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIKDLEDNLSIIRLRFGDNSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQSNAIRGLLLQSGWVVEKLEDDSCVVTYVVQLDPAGWLPKCFVNRFNTKLVMIIENLKKLAQACPSEGEI*

>Glyma17g00670.4   sequence type=predicted peptide   gene model=Glyma17g00670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWRYQNEGQTHSTRFAAVGFLDLSLPNSSSQWPMPLMLQSQQWDSDLVEARYIKDLEDNLSIIRLRFGDNSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQSNAIRGLLLQSGWVVEKLEDDSCVVTYVVQLDPAGWLPKCFVNRFNTKLVMIIENLKKLAQACPSEGEI*

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