Report for Sequence Feature Glyma17g00640
Feature Type: gene_model
Chromosome: Gm17
Start: 307095
stop: 313072
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g00640
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G39960 AT
Annotation by Michelle Graham. TAIR10: GTP binding;GTP binding | chr5:15994195-15996820 FORWARD LENGTH=621
SoyBase E_val: 4.00E-136 ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
PTHR11649 Panther
MSS1/TRME-RELATED GTP-BINDING PROTEIN
JGI ISS
PTHR11649:SF5 Panther
GTP-BINDING PROTEIN ERG
JGI ISS
PF01926 PFAM
GTPase of unknown function
JGI ISS
UniRef100_B9S055 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein enga, putative n=1 Tax=Ricinus communis RepID=B9S055_RICCO
SoyBase E_val: 2.00E-146 ISS
UniRef100_UPI000233EC53 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EC53 related cluster n=1 Tax=unknown RepID=UPI000233EC53
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g00640
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g00640
Paralog Evidence Comments
Glyma07g40160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g00640 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g002700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g00640
Coding sequences of Glyma17g00640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g00640.1 sequence type=CDS gene model=Glyma17g00640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGAAAGGAATTATTATTATTATTGAGAAAACCCACCAGGATCGCACTGCTGATGAAGGTGCTTGCCTGTATAGCCACCACGAGGTCGAGGACAGCTGTGACCTTGACGTTGACAAAAGTAAGCTGCCATTGCAGTTAGCCATTCTAGGACGCCCTAATGTTGGTAAATCAACCTTATTGAATGCATTGTTGCAAGAAGACCATGTTCTTGTGGGTCCTGAAGCTGGTTTGACAAGAGATTCAATCAGAACCCAGTTTGAATTTCAGGGAAGAACAATTTATCTGGTTGATACTGCTGGTTGGTTACAGATGCAGTCTACTCCGGGCATTATGCAATCAAGGAAGAGTCTACTCCAGGCTCATATAATTGCTTTGGTACTAGATGCAGAAGAGATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAATTATAGCCAGATGGGCAGTGGAAGAAGGACGTGGGCTGGTTGTGATTGTGAACAAGATGAACCTTCCAAGAGGCAAACACCAATCGTCATCCTATGAGAAGGTTATGGAAATTGTTCCACAAGAAATTCAGACAATTATACCTCAGGTAAAAGGAATCCCAGTTGTATTCATTTCAGCATTGGAGGGAAGGGGCAGGACCACTGTCTTGAATCAGGTCATCGAAACATATGAAAAATGGTGTTCAAGATTACCTACAGCTCGTCTAAACCGTTGGTTGCAAAAGGTTATGAGCAGGCATTCTTGGAAAGGCCAAGCAGCACAGCCTAAGGTTAAGTATTTCACTCAGGTCAAGGCCCGGCCACCTACATTTGTTGCGTTCTTAACCAAGTCCTTGAAGGAGAACTTTGATTTGGGTGGAATTCCTATACGGCTCATGCAACGTTTTGTCACTAAGAAAGATGCCAGTGGAAGTGAAACTAGAACTAGCAAGAATAGCCATTCAGTAGGCAGAGTGATTGAAAGGACTGTCTCTGACAAGAGAAGTGTCTTAGTTGAATAA
Predicted protein sequences of Glyma17g00640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g00640.1 sequence type=predicted peptide gene model=Glyma17g00640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKKGIIIIIEKTHQDRTADEGACLYSHHEVEDSCDLDVDKSKLPLQLAILGRPNVGKSTLLNALLQEDHVLVGPEAGLTRDSIRTQFEFQGRTIYLVDTAGWLQMQSTPGIMQSRKSLLQAHIIALVLDAEEIINARRSMKHAEVIIARWAVEEGRGLVVIVNKMNLPRGKHQSSSYEKVMEIVPQEIQTIIPQVKGIPVVFISALEGRGRTTVLNQVIETYEKWCSRLPTARLNRWLQKVMSRHSWKGQAAQPKVKYFTQVKARPPTFVAFLTKSLKENFDLGGIPIRLMQRFVTKKDASGSETRTSKNSHSVGRVIERTVSDKRSVLVE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
