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Report for Sequence Feature Glyma17g00620

Feature Type:gene_model
Chromosome:Gm17
Start:284857
stop:297465
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g00620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02480AT Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein | chr2:661093-665337 FORWARD LENGTH=1218 SoyBaseE_val: 0ISS
GO:0003002GO-bp Annotation by Michelle Graham. GO Biological Process: regionalization SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010026GO-bp Annotation by Michelle Graham. GO Biological Process: trichome differentiation SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010091GO-bp Annotation by Michelle Graham. GO Biological Process: trichome branching SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010638GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0033043GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0045595GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0048589GO-bp Annotation by Michelle Graham. GO Biological Process: developmental growth SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009360GO-cc Annotation by Michelle Graham. GO Cellular Compartment: DNA polymerase III complex SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003887GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0989 KOG Replication factor C, subunit RFC4 JGI ISS
PTHR11669Panther REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
PF12169PFAM DNA polymerase III subunits gamma and tau domain III JGI ISS
UniRef100_B9S048UniRef Annotation by Michelle Graham. Most informative UniRef hit: Replication factor C / DNA polymerase III gamma-tau subunit, putative n=1 Tax=Ricinus communis RepID=B9S048_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233EC52UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EC52 related cluster n=1 Tax=unknown RepID=UPI000233EC52 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g00620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00620
ParalogEvidenceComments
Glyma07g40180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g002500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g00620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g00620
>Glyma17g00620.1   sequence type=CDS   gene model=Glyma17g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGAAATGCGGGTATCTGAGCTTCACTTGAAGAAGGAACTCACCCAAATCCGCAAGGCTGCTCGAGTACTCAGAGATCCTGGCACCACTTCTTCTTGGAAGTCACCACTCAGTTCATCAAGATCTGTGGCTGCATGGAACAAAGACACTGCCAGTAGAAGGTTCACTACCCCCAATGACAAAGACAAGGACAAGGACAAGAGGGTGTTCTTGTACAACTGGAAGAACTACAAATCTTCCAGTGAGAAATACAACGATGAGGAAGAAGAAGAAGATGATGATGACGATGGATCTTCTTCGCTTCTCGGGGACAGAGACAGAGATAGTTTGAGTGATGCTCGCAATGGTTGTGACTCAAAGAGTGATACTTACTTGGCTGCTGCCGATGGTGGCGGCGGCGCTCGTTCTTCCATTTTCCGATGTGGGGATGCCAATCTTGTTTCCAGAAGAGCGGTTCCAGTTAAGAAAAAGAGTAAGAAAAATAACCCACATTTTGATTTTTTAGCAAAGTATCAACACCATAGACCAGGGAGAAAAAAATTGAGTTCTTCCAAGGCATTGCTAGAAGGACATCCTTCGCCTTTTTTTAACAGGGATGACTCGGTTGAACACTCTGATGATGATACCGAGGATTACACTAATTCCGAGGGTGTGAGACCAATTTCGGGGACTTCCCCTTTGCTTCTCAAACTCAGGCAAAAGAACTGGTCTCGCTCTTCCTCCAAGTTCTTGAGAAGAAGCCGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTACGGTCACCGTTATCCCAGCACTCTTGGATCCTGGGATGGAACCACCACCTCGGTCAATGATGGCGACGGCGACGATGAGATTGATGATCATTTGGATTTGCCTGGCCGTCAAGGATGTGGAATTCCTTGCTACTGGTCCAAGAGAACTCCTAAACATAGACGGATGTGTGGGAGTTGTTATTCTCCTTCGCTGTCGGATACTTTGAGGAGAAAAGGGAGTAGCATGCTCTGTGGAAGTCAAAGTATTTATCCAACACACCGTAGATCAGCTTCGGCTTCTCACAAGCGGAGACTCTCTTTGAGGAGTGCTCGAGGTGTTATTCCATTGCTCACTAACAGTGGTGATGTTAGAGAAGGGTCGTCTGTGGGAACCGGTTGGAGTGATGACGAGCTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCATCGAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAATATGAGAGCACACCAGAAAATAATCGGAGTTTCAGCCAGAAGTATAGGCCCATGTTCTTTGGTGAACTGTTTGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCTGTTTCAAGGGGACGGATTGCTCCCGTCTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACATCAACAGCTAGGATATTTGCTGCTGCCTTGAATTGTGCAAGTCCTGATGAGAGCAAACCTTGTGGCTACTGCAGGGAATGTGTTGATTTCATTTCTGGTAAGAGCAGTGATCTATTGGAAGTTGATGGAACTAATAAGAGAGGAATTGATAAGGCTAGATATCTACTAAAACGATTGTCAAGTGGATCATCATCAGCCTCCCCACAATATACAATTTTTGTTATTGATGAGTGTCACCTGTTGCCCTCCAAGACATGGTTGGGATTTCTTAAGTTTCTGGAAGAACCACCCCTGCGAGTAGTATTCATTTTTATAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTAGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGATCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCAATGTCGTCAGATACTGTAGAGACAGTGAAAAGAGCCAGAGAACTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCCGGTCTTATCATGGATATCATTGCTGGATCATATGCAGTCATTGACACCAAACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAAAATGCTTTGAAGCTTCTCTCGGAGGCAGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCACAGCAACTCTATTGCAGCTTGGTTCTACACCTTCTCCTGATCTTACTCAGTCAAGTAGCAGTAGGAGACAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCGAGAGACGTTACCTCTTGCACGCATAAGTCAGACCCTCAATACGTGCCTCAAAAGTCAGCATACACTGCATCCCAGCAAAAAGCCGTAAATGATAATTCCCACCATCAAAAGGATATATCCTCAAAGATTGAAGGTTTCAGCTTGAAATCAAAGCCGTCAAGCAGCCCAGTCATAGATGATGGCTCCACAGTGGTCTCATCTGATGATCTTATGGTTGGGAATACAATGTTTAGGTGCATAGATTCAGGGAAGTTATGTTACATCTGGGTGCATTGTATTGAGAGGTGTCACTCGAAGACATTGAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCCGTATGTGAAGTAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGAGGATGCAGATATTAAAGTTAGGGTTGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTAAGAATAATCCATTTGCCAAATGGCGAAGGTGAAAATCAAGTTAATCTACCGGGCCTAAAGCAGGCAGAGTCAACAGTGGCTGGTGAGAAGGAACAAAGAAAGAGTCATATGAACGGAACGGAGTCTTATTCTAGTTTTCCTCCTTTGCTGGATGGAAACCTTCAATCTACCGCTGCTTCATCAGATATTTTGGCTGAAGGAAATGGTGTGAGGGAGAGGAGACAGGATAATCCAATGCAAAGAATTGAATCCATCATTCGTGAACAGAGGCTGGAAACTGCCTGGTTACAGGCAGTTGAAAAGGGTTCCCCTGGATCATTGAGTCGGTTGAGACCTGAGAAGAATCAAGTACTGCCACAGAATGGTGTGGACCCAATTGAGTCCATGGATTCAACGAGATTTCCCTCTCACCAGCATTGGGAAGATGATCCAAATGATGAAGTCAAAGTTTTAAGCCTTAAAAATGGAAGGATCCCACAGAAGGATCAGATTGGTCGAAAGACAGATCGTTTTCCCATGTCACCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATCTGGGATATGAATCAGGGTCAGGAGCGGGTGGTTGTGGATTTTTATGTTGGAATAAGTCCAAGCCTAGAAGGGTTATAAAGGTCAAAGGTGGCACCCCGGTTAGAGCGGGTAGAGCGGCAACTTTTACATTGTTTGGTGACTGCACTAAGCCAAATAAAAGGGGGCGGGGAAGATAA
Predicted protein sequences of Glyma17g00620
>Glyma17g00620.1   sequence type=predicted peptide   gene model=Glyma17g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNKDTASRRFTTPNDKDKDKDKRVFLYNWKNYKSSSEKYNDEEEEEDDDDDGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAADGGGGARSSIFRCGDANLVSRRAVPVKKKSKKNNPHFDFLAKYQHHRPGRKKLSSSKALLEGHPSPFFNRDDSVEHSDDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRRMCGSCYSPSLSDTLRRKGSSMLCGSQSIYPTHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTGWSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYESTPENNRSFSQKYRPMFFGELFGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDESKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSSGSSSASPQYTIFVIDECHLLPSKTWLGFLKFLEEPPLRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSCTHKSDPQYVPQKSAYTASQQKAVNDNSHHQKDISSKIEGFSLKSKPSSSPVIDDGSTVVSSDDLMVGNTMFRCIDSGKLCYIWVHCIERCHSKTLRQLLHNHGKLVSVCEVEGVLVAYVAFEDADIKVRVERFLRSITNSMEMVLRRNVEVRIIHLPNGEGENQVNLPGLKQAESTVAGEKEQRKSHMNGTESYSSFPPLLDGNLQSTAASSDILAEGNGVRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDPIESMDSTRFPSHQHWEDDPNDEVKVLSLKNGRIPQKDQIGRKTDRFPMSPSLLHDNSLATISGKDNLGYESGSGAGGCGFLCWNKSKPRRVIKVKGGTPVRAGRAATFTLFGDCTKPNKRGRGR*






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