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Report for Sequence Feature Glyma17g00611

Feature Type:gene_model
Chromosome:Gm17
Start:277788
stop:282336
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g00611
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02500AT Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein | chr2:671054-673124 REVERSE LENGTH=302 SoyBaseE_val: 5.00E-114ISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0006733GO-bp Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process SoyBaseN/AISS
GO:0006766GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process SoyBaseN/AISS
GO:0008299GO-bp Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009072GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process SoyBaseN/AISS
GO:0009106GO-bp Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process SoyBaseN/AISS
GO:0009108GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process SoyBaseN/AISS
GO:0009117GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0015994GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0019216GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019748GO-bp Annotation by Michelle Graham. GO Biological Process: secondary metabolic process SoyBaseN/AISS
GO:0031408GO-bp Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process SoyBaseN/AISS
GO:0044272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0050518GO-mf Annotation by Michelle Graham. GO Molecular Function: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity SoyBaseN/AISS
PTHR19136Panther SUGAR-PHOSPHATE NUCLEOTIDYL TRANSFERASE JGI ISS
PTHR19136:SF21Panther UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE-RELATED JGI ISS
PF01128PFAM Uncharacterized protein family UPF0007 JGI ISS
UniRef100_A9ZN09UniRef Annotation by Michelle Graham. Most informative UniRef hit: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Hevea brasiliensis RepID=A9ZN09_HEVBR SoyBaseE_val: 1.00E-133ISS
UniRef100_UPI000233DF52UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DF52 related cluster n=1 Tax=unknown RepID=UPI000233DF52 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g00611
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g00611 not represented in the dataset
Glyma17g00611 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g00611 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g002400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g00611
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g00611
>Glyma17g00611.2   sequence type=transcript   gene model=Glyma17g00611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGAGATGGTAGCTATTGGCTTTGGAGCCCCTCCTTCTCCACTTCCGTTTCATCTTCGCCTGGCTTCCTCTCCTTCTCCTTTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGCTGTTGATCCTAACTCTGAACTTGTTTGCATTCATGATTCTGCAAGACCTTTGGTATTATCAGCAGATGTGAAAAAGGTCCTTAAAGATGGTTTATTGAATGGAGCTGCAGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAAGAGGTATTTACTAAATGTTGGCACATGTCAATTCCCTCAACTCAGTTATTTTAAATGGTTGATGAATTTTCTTTTTCTATAAAAGTGAATTTGATATCTCCCACCTACAAAGAATTATGTAGAAAATTTCAAATCCAAATGTGATGAACAACTTTATGCAAGAATCCACATCTATCTGTGTTTGGTTTGGCCGTGAGGACCCAAAAACCAGCGTCCTATCATGATTTTCCACCACACTAGAGAGTAGTAGGTTTAAGTCTACCATTATTTTTTGAACATGATCCACTGTATTTTGAAACACACTACATGTTTTCCTTCGAGTGATAACAAATTACCGTTCATCAGGGTTGCGAATTTAGGTTGTCTTCCTTTCAAGTAAAATGCATTTTTTTGCAGCTATATTCTTTCTTCTTTCCCCTGCTTGTGTTGAATCTCTTTTTCTTTTTGTTATGGCATCTGATCCACAAGCTTAATTTTTAATTTCTTTTGATGTAATTTTAGGTTCACATCTGTGAATAGATGGAGGTCAGTTGTTCGCTTTACATTTATATAACTGCTGCACAACTATGGACAAGTTTTTATCTCAGCTGTGTTTTTGTTTACACTCGATAGAAGTAACAATAACTACAGGAATATTTGTGCACGTATATTC
Coding sequences of Glyma17g00611
>Glyma17g00611.1   sequence type=CDS   gene model=Glyma17g00611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGCTATTGGCTTTGGAGCCCCTCCTTCTCCACTTCCGTTTCATCTTCGCCTGGCTTCCTCTCCTTCTCCTTTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGCTGTTGATCCTAACTCTGAACTTGTTTGCATTCATGATTCTGCAAGACCTTTGGTATTATCAGCAGATGTGAAAAAGGTCCTTAAAGATGGTTTATTGAATGGAGCTGCAGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAAGAGGCAAACAGGGAGTCGTTTGTTGTTAAAACACTGGACAGAAAAACGCTATGGGAGATGCAGACCCCACAGGTTATCAAGCCTGAGTTGTTGAGGAAAGGCTTTGAGCTTGTAAATAGGGAAGGTCTTGAAGTTACTGATGATGTGTCCATTGTTGAACACCTAAAACATCCTGTTTATATCACTCAAGGATCTTATACCAACATTAAGGTGACTACACCTGATGACATGTTACTGGCAGAGAGAATATTGAATATAAATGATGAAGACAATATAGTCTTGCCAGTTCACCTTTGA

>Glyma17g00611.2   sequence type=CDS   gene model=Glyma17g00611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGCTATTGGCTTTGGAGCCCCTCCTTCTCCACTTCCGTTTCATCTTCGCCTGGCTTCCTCTCCTTCTCCTTTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGCTGTTGATCCTAACTCTGAACTTGTTTGCATTCATGATTCTGCAAGACCTTTGGTATTATCAGCAGATGTGAAAAAGGTCCTTAAAGATGGTTTATTGAATGGAGCTGCAGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAAGAGGTATTTACTAAATGTTGGCACATGTCAATTCCCTCAACTCAGTTATTTTAA
Predicted protein sequences of Glyma17g00611
>Glyma17g00611.1   sequence type=predicted peptide   gene model=Glyma17g00611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAIGFGAPPSPLPFHLRLASSPSPLAFPIIHKFQNAGKSVITICSKKNAKSRVVTLCSAPVQEQEVSDITLRERSVSVVLLAGGQGKRMGASMPKQYLPLFGQPIALYSFHTFFHLVQVKEIIVVCDPSYKDIFEDAKGDYQAELKFALPGKERQDSAVDPNSELVCIHDSARPLVLSADVKKVLKDGLLNGAAVLGVPVKATIKEANRESFVVKTLDRKTLWEMQTPQVIKPELLRKGFELVNREGLEVTDDVSIVEHLKHPVYITQGSYTNIKVTTPDDMLLAERILNINDEDNIVLPVHL*

>Glyma17g00611.2   sequence type=predicted peptide   gene model=Glyma17g00611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAIGFGAPPSPLPFHLRLASSPSPLAFPIIHKFQNAGKSVITICSKKNAKSRVVTLCSAPVQEQEVSDITLRERSVSVVLLAGGQGKRMGASMPKQYLPLFGQPIALYSFHTFFHLVQVKEIIVVCDPSYKDIFEDAKGDYQAELKFALPGKERQDSAVDPNSELVCIHDSARPLVLSADVKKVLKDGLLNGAAVLGVPVKATIKEVFTKCWHMSIPSTQLF*






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